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CIS-REGULATION

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  1. Region 'REG00000516'

Cis-regulatory Region

Name

Ci-meis -6460/-2176

Short name

n/a

Region ID

REG00000516

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(complex_region)

Author

Kusakabe team (2009-12-11)

Annotator

Delphine Dauga (2010-01-11)

Curator

Delphine Dauga (2010-02-26)

View position in WashU

Description

Conversion to aniseed format of DBTGR database entry from Kusakabe team.

Transcription start site is based on the start of the first exon of the KH transcript model.

Hierarchy of Regulatory Regions

Regulated gene(s)

KH2012:KH.C10.174 (MEIS1; MEIS2; MEIS3)

Construct(s) made to test this region

CONS00000488: pCi-meis -6460/-2176::EGFP

Show in situ data
Overview of functional TF binding sites in this region

3,136,0433,140,327

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [3,136,043 / 3,140,327] on scaffold KhC10

Sequence from JGI V1.0.

Show sequence

Length: 4,285

CGACGCACGTTTCCCTATATTGTCATGCTACGACAATCGCCGTCCGTTTCCACCGCTTTC
GAAGAAAATCCAACAGTTTCCATCCTAGTTTCGGAAACGGTGGGCTAACAGGGCGGAGCG
GGGCGCATTATAGGATGCAGTCGTATATCATTTCTTTCGTTGGAAAAGGGAAACGTTAAT
TAAGCTTTCCTGCTTTCTCGTGGAAGAAAAATGCCTCCACACGAGGGGCGACTAATCATG
CTTATGCGTCAGGTAACCTCGCTTATCGGCGCACAAAGATATATCTCTTCTTGATACTTA
AGATTAAAGTGGATTAGATTGTTTTGCAATCTGTATAAACCCAGCTGTGGAGTTTGCTAG
TTGAATCGGACATAAAAGTTTTACTATTGGGTCGTGCCATTTATTTTTCTTCACTTGTTA
AATATATCAGGTTGGGGGACACCTTTTATTCTATTTCCCCTGCCATTTGGTAGTAAACAA
AGTATAGTTATAGATTTATAAAACCGTATTCCCACGACTCCCATAGGCGTTTTTTAATTG
TCTAGAACACCTTTAGGATATTTGGATAATATCTGCTAAAGGTGTCCTGTCTTCCCCCAT
CCTACTATATCTTATGTTAGACTTGAAATTGTTAATTACATTAACGGGTACGTAAACCGA
CACAACATATGCGCTATGATTCCTATGTCAGTACACTACAGCCTTAACGAGCGCGTGAAT
GCATGTGAATTAGGGTCGGTACTCCTGACAGTCTGCTCTTCGGATTTCTGCCTTGGAATG
CACATGAAGCCCATAGCAAAAGCTTTTGATTGAAATGAGAGAACAGTGACAAGTGCACAA
TAGAAGGAAGCAATTCAAACGCATAGAAATGCTGGCACGTTTTCCTCCAGCAGGCCAGGT
CATCCATAACTTACTATTCATACGCCTGGCGTCGGGCGAGCGACTTTAACGTCGCATCGT
GTAGCGGTTCCAATCGTCACTCAAACTGTCATTACGTTTCCTGGTTCGAAGTTTCAATGG
GCACAACAGTCGTTGGATTCATTCGCGTGGCTTCGAGCCTTGTTTTAGATTTCCGAAGAA
GGAGTGTCTCGATTTACAATAGCGATTGTTGCGCGTTTCTTCAACACAATCTTACGCTGC
ACGAGCCAAAGGGTGCTTCGAAGTAAATGAATCAGCATTGGCGACTTTCTGGGAAACGCA
ATGTTTCAACAAAAGTTTTGTTTTTTACTCACTGCAGTGAACGGGCTAACAGTTTAAAAA
ATTCCTTTTTATAAAGAAAAATCGTGCGTCAAAATGTAAAAGAACATAGGGATTTCACCA
CACAGTTTCCAAGTCTGCACAGCCAGACAAAACGTAACAGAGAATACCGGACCGAGGCGG
TGATGGCGCATAAATAGAACAAACGTGACTAAAATCAGACACACATGCTTCGTAGTGTGT
CTTTGAACCTGGCTTGCATTTTAAAAATGTTTCCGTGCCAACGTCTACATTATTGATAAC
TAAGATCGTGTTTTGGTGACCCGGCGGTTTATTTAGGAGTAAAATACAGCGCTGTAATCC
TAATACAGCTTTGAACCATTCAGTTTTATGTTGTAGATTGGGGAAAGATGGGACAACTTC
AGTATAATATCCAAATATCCTGATCGTGTTTTAAACATTTAACAACAGTATTTGGGAATC
CTGAAAAAACGGTTTTATAATTCTTTGAATGTTCTTTGTTTACTACCAAATGGTAAGTGA
AAACAGAATGAAAAAGTGCTCTATCTTCCCCCACCCTACTATATTCTAGTTAAAAAGAAA
GCGTTTGCATTTTCGAAGCACCGTCCGTTCGATTTCAACTGATTCAACTTGTGGTAATCG
CTTGCAACCGAGGTGCTGTTTACTGCGAGCGACTTCCTATACACGAGTGTTTGATCGAGC
GCTTTCGGAGTTTATCCGACAAGACCTATCAAGCAGTTTGCTGGATTTAATAAATTGTAT
TTCCAAGCGCCGCGCAAGCTGAGTTACATTCAATCTCATTCAGTGCGTCTCAAAATTAAC
ACGGCTAACGCACATGTACGCGTTTAAGGTATATTGCAACTAAACGTTTTCCAAATCCAG
TCCGAACATTTTCATTAAAAGTGAGAATACTTTTGTCGCTTTTCTCTGTTAACGCTTTTT
GATCCAACGCCGCGACCCACGACTTAAAGGGTCGAGGTGGTATATACGCTTCACTTTCAC
AGGCTTCGCTTCCCATTTGTTCGGGCGAGCAACTGTGACCGTGTTATCAGCTTGCGCCTC
ATTCGTAACCCTCTGGCAGTCGTACCGTCATTCGTTCACAAGGCATCCCGGGCGAACCAG
GGAATTACATACAGCACAATAAGATCGCGAGCACTCGAACGACTGTTTTAGAAATGAGTC
AGTTGTATTTCTCGGAGCCATGTCGGGACTTAGAAGAAGTATTATTGAGACTTACTTAAG
GTTTAGCCGGTACCAGGTAATACAACACGCGCTAATACGAAATAATACTGGTGAATGTCT
AAAAATAAATGTATTTTTTTCCGGCTTACAATTTCGGGTTTAGTAAGTGTTTTTGTTGTA
AATATGCGTTTTTGATTTCTGTAAATGCGCATATTACTTACAAAACAGTTAAAAGGTTGC
TTAAACTTGTCTTTGCTCTAATACCTTCAAATCTAAGCCATATTTTATGTAAAAAATGAT
TGCATATCCGACCGTTTAAGTAAACCATAAACGTTAAAAATTCGGTGAGTTATACATGTG
ATCATACACGCCATTTTTTTCGGATAAGTAAAACTTTACTTCATACGACTTTAATTTAAA
CTTTAAACAAAAAAGGCTTCAAATTAATTGGCGTGACGAGACGTCGTATACCCCGTCACC
ATTTGCCGCAATTAAACTTTCGCAGCTCGAAACGTATTCTCGTTTTGTTGCCGCGCTTGT
CTTATTAAAAAACCGCGACCTCTCAACGTCCCCGGGTTCTAATGCTGGCCGATCATCTGT
GCACGCGGGCGATGCTACAATACAACGTTGTTCGATAACTGCATGTTATAATGATGACTT
ATCAAGCTTTACGAGGTCGTAACGTACGGCGCGTCGCCCACGCAACCTGGCTCCTATTGC
GTGGTTATTAGGCCAATGAACGATTCATTAGGGGAGTACGATTCAGTAAAACGACTTATT
GTTCTGGATATGAAAAATTCCGTTTAGATTTCGCTTGGCCAACGCGAGGCAGGCAATAAA
TTATTATTATTTTCGAATATTAATAATTGGATGTGGTTGGTTCTGTTATAATTGAATGCT
AGATAAAGTGGTCGCTTGTATTAGGGACACATATAGTACTACGGGGGGAGACGGGACACC
TTTGGCACACAATATCCAAATATCCTGATCGTGTTTTAAACCAATAAACGGTCTATGGTG
TGAGGATACGGTTTAATAATTCTTTGAATGTTCTTTGCTTACTACAAAATGTAACAATGG
CATGAAAAGATGGTGTCCCATCTTCCCCTACCCTATCATACCAAGACAAAAGTTCGCGAT
GAAAACATTTTACCGAACTTTTGAAAAAATACAAATACGAATACAGAGGTTTATAAGTTA
ACAAAGGACTTACATTTTCGGTATAGCTACTCAGAATACATTTTGTGACGTTCCTGTATC
GTTTTGGCTTGGGTAGCTGCAATGAAAAAAGTTGTGAAAAAATATATGTCTAAACGCATG
TTATTCAAAAGAGTTTTTATCAAAAAAAGAAAATAACACGGGTTAAACCGGTCACAAAAT
TAGGAAAAAAACAATGTTAAATTAAGCATACCTGTTCAAAATAATACTTGTGTAAAAATG
CACATTTGAACGCAGTTTGATAAACGCTGTGAAGGGTTTAACTGTTATTTGTTTACAGCT
CAGACCGCCTCTTACGAAGTTGGTAACGTAGCAGGCACAACAATGATTTGACAGGCGGGA
GCTGTCAGTGACAGAATATGGGCTTCAATTCCTGTTCTGTCTTGGCAAGCAAATCAACAG
CGTTTGACAGCGAAATAAAGATATAGCAGAGGGCTGGTTTTACAGTGTTGATATAACGTT
TTCGATTTTGACAAAAACTTATGCATATTTGTTTTAATAGTTGCGGAGTATTTTTTAGTC
CGTGGCTATTCTCTTTTTGCAGGTTATTATATATTTGTATGTATAGGTTTTAGGATATTT
AGGCAATAAAGTTTATGTACTATACCCACTGTATATTTGGACGATTTGTGTCGAAATACT
TTTTGGGAAATACTGTCTCTACTGA

Reference(s)

Sierro et al. (2006). DBTGR: a database of tunicate promoters and their regulatory elements. Nucleic Acids Res. 34(Database issue):D552-5

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