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CIS-REGULATION

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  1. Region 'REG00000515'

Cis-regulatory Region

Name

Ci-troponinT -2191/74

Short name

n/a

Region ID

REG00000515

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Christopher D. Brown (2009-12-10)

Annotator

Clara Degos (2009-12-12)

Curator

Delphine Dauga (2010-02-26)

View position in WashU

Description

Transcription start site is based on the start of the first exon of the KH transcript model.

Construct #1574 in the paper.

Hierarchy of Regulatory Regions

Regulated gene(s)

KH2012:KH.C4.57 (TNNT1; TNNT2; TNNT3)

Construct(s) made to test this region

CONS00000487: pCi-troponinT -2191/74::LacZ

Show in situ data
Overview of functional TF binding sites in this region

5,221,7855,224,053

Motif Name Binding Factor(s) Sequence Position in Region Comment
1 T-Box n/a TTAACACCTT [5,223,441 / 5,223,450]
2 bZIP n/a CGTCAC [5,223,468 / 5,223,473]
3 bZIP n/a CGTCAA [5,223,485 / 5,223,490]
4 bZIP n/a CGACAG [5,223,497 / 5,223,502]

Sequence

Aniseed Coordinates: [5,221,785 / 5,224,053] on scaffold KhC4

Transcription start site is based on the start of the first exon of the KH transcript model.

Show sequence

Length: 2,267


TTAAAGATTTGGAAAACCGTGGCAATCCTCGTACTTAGACCTTCATTTCTTCTGAACTTT
TTCTTATAATGCGGTTGTTATGTTAAAACGAGCGAAAATTTCGGTGTTTTCCAACCAGCA
ATCTCGTGTGCAAAATTTCGAAGCAAATTTAATTCCTAAGTTTCAAAAACCTATTAATCG
TGAAGCTAGTCTCAATTATCTTTGATACAGCCACCCGCACCCACACGCGTGCTAATGTAG
CAGCCTCTGTTGCCTTTTGACTGCAAAAAGTTCTGCGTGTTGTACCTGCGTTGTTATATA
ATATATGCTCGTTTGTTGAATCAAATCGATGAAGCATAAATGACCAAATGTAGCTCTCTG
TTTGTTTTGAATGGTGAAAATAAATTACTTCCGCGTATCTGTTCTTATTTGTTCCTACTT
GTCAGTGGATACATCTATTCAACCAAAGGTTAGCGGGTTCAAGGCTCGATGCCGCTACCA
TTGTGGTCAATGTGTCCTTGCTCTCCAACCAAGTGGTCACTAATGACAAAAAACTAAGTC
ATCCATAAACTCGTAAGAACAGGGTTTATGAAACATAACACCCATGTTATAGCAGATAAA
ATGAATTACCATAAATCATCATTACAATATAGCTTTTAGTCCCGATTTGATCAAACACAA
TTTCCACAAATTACTAGTTTCACACTATGCAACTGTGACGAAGTATTACCACATTCTTAA
GGTGTAGTAAAGTATAACTTCAAATTTATTTTAGTTTGGAATCTTAAATGGCTTGAATCT
TGCCGCAATTTTAAACTATAGATCTATAACTAGTCAGTGAAAATTATAAAGCATGTATTC
CCATAGGGCTGACGAGTCTTGAACCAGATTCCTACACGACTATATAATGTTTTATTTCAA
GCGTTTTCAAATGTTTTAATGTCTTAGGGCACTTCTAGGCAATGCGACTCCAGACATGCA
TGGCAGTAAGGTAATGTTATAAGCAAAAGGATAGCACAATGATGGATACAAAATATGATT
TAAATGGATTACGTTTTAACTATATAGCAATGCAAAAATGGCAACTAGTTTTACAAATTT
AATAAAACAGTAATGCAGTCTCCTTGTGTCGTGTGTCAAATGTGACATTGTTTATTAATT
TTGGGCTTAATTGATTTCAAGACGTCCCGGTCGTTACGTTGGTCGTTTCATTCACATATG
CAGTTTATTATTACGCCGGCATGCGCACCGCTATGTGAGTCAGCCGTAAATATGAAACAC
AGCCATTGCTACATACATTTGACTGACACTCGCATCACTTCGCACATACTGAAGACTCAA
TCATGCTTTATGTCTCATCACACGCACACACCGCGTGCCAGGCCAACTAATCGCTAATTG
AAGCTCCAACAGCCGCTCGTCGCCTCAAACCCTACGTCACTCTTCGATATAACCGCCCAA
TAGGAGCGCTGTATTTTGGCACGTGACATTATACACTATTTTCGTGCATACAACGCTCAG
GGTGCCTGGATAGTCAGGCAAGACACCCTGATAGCAACCAGATGCTGGTATTACAATACG
AGGCAATAAAGCGGCCTAGATAGATAGTAAGAGGCGAGAAACGGTCGAATGCATTGCGAG
TATCAAGCAGCGATCCCAGCTCCGCTTCGATTGTCATTAACACCTTGCGATCCAGAATCG
TGACGTCACCTACACAATGACGTCAAAGGTGACGACAGGTTTTGAAAAAAAGGTTGAGTC
TTATTCTATAAAAGGTTGGTCGGCAGCAACATAATCATTATCGAAGTCGCTTCAGCTTCA
TTCCATTCCTACTTCAAAGCATCAGCTTCTCAGGTCTTAAAGTTGTAGCTTCAATATGTT
CATACAGAACCAAGCAACAATTATTCAATATAGAAAAAGCAGTTCAGAAAGTTTATCTTT
GGCATAAATGTGACGTCATAGTGACGTACTCGGTAATCTATTTCACCGGTGCAATTTGCC
AATTAGATTAATTTGGTTAAACCAAGGTATTCGAGAAATATGTTTCGCACAGTCGAATAT
CTGCTTGTGATGTCATAAGCCAGCAACGTAGACAGACGTATCTTCAGCTGTCGTTCTGTG
ACGTCATAGTGGTATCGGCGCATTGTGCCGCGGTCGGCACCCATGGTCCAGTGACCATAT
AAGTTCATGTTGTTTTCTTTCCATCACCAGGTTATAACTTGATTAGACTTTCTTACCTGA
CTTGACCGTTTGCTCAAAAATGTCGGACTCAGAAGAATACAGCAGCG

Reference(s)

Brown et al. (2007). Functional architecture and evolution of transcriptional elements that drive gene coexpression. Science 317(5844):1557-60

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