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CIS-REGULATION

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  1. Region 'REG00000514'

Cis-regulatory Region

Name

Ci-troponin I -2014/66

Short name

n/a

Region ID

REG00000514

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Christopher D. Brown (2009-12-10)

Annotator

Clara Degos (2009-12-12)

Curator

Delphine Dauga (2010-02-26)

View position in WashU

Description

Transcription start site is based on the start of the first exon of the KH transcript model.

Construct #1565 in the paper.

Hierarchy of Regulatory Regions

Regulated gene(s)

KH2012:KH.C11.673 (TNNI1; TNNI2; TNNI3)

Construct(s) made to test this region

CONS00000486: pCi-troponin I -2014/66::LacZ

Show in situ data
Overview of functional TF binding sites in this region

1,683,1851,685,264

Motif Name Binding Factor(s) Sequence Position in Region Comment
1 T-Box n/a AGGTGCTT [1,684,425 / 1,684,432]
2 bZIP n/a TGACGTCA [1,684,434 / 1,684,441]
3 bHLH n/a CAGCTG [1,684,447 / 1,684,452]

Sequence

Aniseed Coordinates: [1,683,185 / 1,685,264] on scaffold KhC11

Transcription start site is based on the start of the first exon of the KH transcript model.

Show sequence

Length: 2,080


ATAATTCTGTAACCTTATTTCCCTGAATATCATTAAATGGGGGTCCGTAAAAAGAAAATT
AAAAAAAGTCTCGTCTGACAAAGTGTCCCATCTTCCCCCACCCTACTATATTATCCCTTA
TTACACAATCGTGTTTTAACAACCAACAACGCTCGTTGAGAGTTATGAGGATAACTCTGT
AAATATTTTTTGTTTAATACCACAAAGGACAATATAAACCGAAATAAAAACATGGACACT
CTCACCCCAACCTATCCTATACATAACTTTACGTTTCAGCTGTAGAAGAAGTTACTACAA
GCGATGGAGACGCTTGATCAACATTAACCGCAAGAATCGTTTACAATAAACCAACACAGC
ATTCACATTATTAGTGTATATACAACGTATAATGTCACCCAGCGCCTATCATTCTTTACT
TCAACTATAATAAAAACACCACAAAATATATCTGCATCTTCTATTATCATTATGAATGAA
TGAGTGAATGAACGGATATAACTTGCTTTATCCTTGCTTGGCTGAAAAACGACAGTCGTT
ATAAAACACAGGCGTTCTGTTTCATACACCTCGTGCCAGCTTACGAGTAACCAAGTATGT
TACTTCGTGGGTGATTACTTTTTTTTTATTTGGGTTGGGGCAATTGCCGTCGAGTGTCTG
GGTTGGGGCAATTGCCGTCGAGTGTCTGGGTTGGGGCAATTGCCGTCGAGTGTCTGGGTT
GGGGCAATTGCCGTCGAGTGTCTTGCTCAAGGTCAAATAAACTCCCACAGAGCACAGGCA
GCGACATAACCCCTTAATTTAGTTAGGTTAACTACAAGTTGCAAAATATTACCAATTTTC
AATTTTAAACCTTTGAACTTTGTCTTCAATCTTGCCCCACTTTGTAGTTTCAAATATAAT
ATACTGATACAAAAACAAGATAAGTTTTGGAAAATCTAATTGAAACTTATACACATTTTG
CTGGTCATCTGCCGCCCCAGCAGACTATATAGGAAATCAAATTGAATAAATCAACGCACT
CAATTTTCAGCAGGACTTTACTTTTCGTGGCGAGCAGCAAAAAGCGGATGCTAATTTCGA
TAATATTTGGATTTGTTTTACATTATTTAGAAAACGGGTTTCAAATTGATAAAACTGCAT
ATTGGTAATAATTAATGTGGAAAACTCTTAAGAGACAACTGAGTGGCATGCAGGGCATCG
CAATAACAGCGTCTGCTGCGTGTCAACTCGACAGCGGGGTAGGTGCTTGTGACGTCATAC
TGCAGCTGTTATCGCCTGAGCAGCAGTGTTCCCCGTGATTTTTTGCTGTGATTCAAATTT
ATTGATTACAAATATAAAAATTATATTATATTATACTTAATCAATGTAAAGTATTGATAT
AAGCATATTTCGTTAATTTAACCGAAATTAGCTATAGTTTAAGCAGTTTCCAGAGGTTTA
CATTAGTACGGCGGCAACACTCGTTCTATATTAAATCCAGACAACAAGAACTTCTTCTTC
GTTTAGTCCTTCGATATTCTATTTAAGGGAGCTTACAGCATCCATCCAACATCGGTAATC
AAGAATCTGTTAACCTTGTTTAGTCACAGAGAAAGGTTCATGCATTTAAGAACCCCTTAG
TGAATTTAAAGAATTTTCTTGTAGAAAGGGCCGCATAGTGGCCATGAATACTATGGTTAA
CTATTAGCTTAGTTGAGTTTATCATGCTCAATATTTTTATCATTTAGATTTTCTGAAGGG
TTTAAAATTAAAAGCCTATTAAGCATATTTATTTAAATATAAGTTTATCCTCTCAGGGTT
GTGATAGTGATAACTTATCAGGATTTATAACTATAGCGCAATACTGAATTTATCAAGCTG
ATAAGACTACCAGTACCTGCGTAAAACCTTTAGGAAGTCTAAATAGATACTTACTCTTCA
GTAACTGAATGCAACCTGTATAAACGGAATATTGCAGAGTTATATTTTTATCGTTTATAT
CCTTGTAGTTCACTAATGCATTTTCATCTTCAGCAGTATCAATTGGTTAAGTAGGTCTTA
GTTTGGCTTAGCAACACAGCAAAACAGCACCATGTCGGAA

Reference(s)

Brown et al. (2007). Functional architecture and evolution of transcriptional elements that drive gene coexpression. Science 317(5844):1557-60

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