- Region 'REG00000513'
Cis-regulatory Region
Name
Ci-MBP -1360/123
Short name
n/a
Region ID
REG00000513
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(extended_promoter)
Author
Christopher D. Brown (2009-12-10)
Annotator
Delphine Dauga (2009-12-10)
Curator
Delphine Dauga (2010-02-26)
Transcription start site is based on the start of the first exon of the KH transcript model.
This region corresponds to construct 1562 in the paper.
- Ci-MBP -1360/123 REG00000513 [ regulatory_region (extended_promoter) ]
- Ci-MBP -270/123 REG00000602 [ regulatory_region (extended_promoter) ]
- Ci-MBP -1360/123 MyoD/Tbx6/CRE mutated REG00000606 [ regulatory_region (extended_promoter) ]
2,084,0892,085,571
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment | |
|---|---|---|---|---|---|
| 1 | bZIP | n/a | TGACGTTT | [2,084,444 / 2,084,451] | |
| 2 | T-Box | n/a | ATAGCACCTA | [2,084,459 / 2,084,468] | |
| 3 | bHLH | n/a | CAGCTG | [2,084,474 / 2,084,479] |
Aniseed Coordinates: [2,084,089 / 2,085,571] on scaffold KhC1
Show sequence
Length: 1,483
AGCAAAGTTTCGTTCCAATTTAGCGAGCCACCCGGGATAGCTGAAGAAGACGAGAATGAC
AATTTAACTTCCAATTCACAAGCTGTAAACTCTCTTCCAACTGTAAAAGTAATCGATCCA
AAAATTAACGTTGCCGATGACGCTGGTTACATAAACACTCCGTTATAAAGGAAATCTATA
TATCGCGTATATATGCCCGCCGACATTTTTCTCGTGTACATTTATACCGCTTAAAGCCAG
ATTGTTAGTTATTATGCGTAGTTTACCGAAAATCACCATACGTATATAGCTTGCTTCTGC
CAAATCAAATATACAGTAATGTGGGGGAGATAGGACACTTGTAATTATTCTATTTTCCTT
GTCCCAATTGGTAGTAAACAAAGAACAAAACAAAGAATTTAAAACCGCATACTCTCGATT
TCGAAATGGACCGTTGTTAATTGTTTAAAACACGATTTTTTTGGATATTATTAAGGTGTT
CCATCTCTCCCCACAACACTGTATATATACTTTATATTTTTTTGGTTGTTAGTCTAGTCA
ACCTATTACCATGCAAGAGTGATTCTGCGAATACAACAACAAAATGTAACTATTTTTGAA
GTGTTTTGTTGATGTATTTAATGTCTATAAATTAAAACTAACAGTTGGCTATTAAACATT
CATTTCTATATATAACACGTCATCGGGTTGCTACGTCATCAGAAAACTGTTGACAGCTAA
AGTACTGAAGGGATAAATATAGACGCGTGCAGACTTTGCTGTAAAACTTAAATGTTTTTT
CCAGGTTTCTAGTATACAGTTATGGTTTAACGAGTTGCAGATTTAAAGATTGAGAAATGT
AATGTACAGTTTCATATAAAAAATAAAAAAAAGTTGTGTGTGTGTATAAACAAAAAAATC
TGTTAAAATACATTTCAACCCGGTAGAGATATACATCAGTATGCAAATATTTAACCTAAG
GAATACGTTACATCGTGTTTAATAAATCGACTTGAGGTCAATAATTTAAAAATATCAAAC
TTTGCTACCGAATGTTCAGCCATGCAAATGTATACCACCAACGGTCACTGATTCAATTCC
CACACATCAGTACAGCTGGTCGCATAGCACCTAGATTCGATGACGTTTCGTTAATTGCAA
CACTCGCAGCACTCAGCCTTTTTCTCTTGCGTAGCAATCAGCACAGGGCGCCTTGCTCTT
ATCAGTAAGAAGCCGCATTCTTTTCTGCCAGTCAAGTTTTGCACAGACGAAGCACAGACC
AAGTGACTCAAGGGTGTGCAAGCATCTGTTAAGTTGTTTATATTATGTTGAATGTACTTG
ATGTGCATTTAAAACGACTGTAGAAGCAGTAAGCAGCAGGTTTTGTTATTTTTTTTTACA
GATTCCCCTAGAATCATAAACCATTAAGTTTTGAGTCGTACAACTGATCTGTGTTTCTAA
ACATCAGCGGAATTTGTTTCAAATATCAAGATGCCAGTGCCAG
