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CIS-REGULATION

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  1. Region 'REG00000510'

Cis-regulatory Region

Name

Ci-tropomyosin 3 -2102/-103

Short name

n/a

Region ID

REG00000510

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

inactive_region

Author

Christopher D. Brown (2009-12-10)

Annotator

Clara Degos (2010-07-23)

Curator

Delphine Dauga (2010-02-26)

View position in WashU

Description

Transcription start site is based on the start of the first exon of the KH transcript model. Region corresponding to construct 1594 in the paper.

Hierarchy of Regulatory Regions

Modification of Ci-tropomyosin 3 -2102/82 by deletion

Regulated gene(s)

KH2012:KH.C3.661 (TPM1; TPM3; TPM4)

Construct(s) made to test this region

CONS00000482: pCi-tropomyosin 3 -2102/-103::LacZ

Show in situ data
Overview of functional TF binding sites in this region

4,365,4824,367,480

Motif Name Binding Factor(s) Sequence Position in Region Comment
1 T-Box n/a TACACAACT [-112 / -104]

Sequence

Aniseed Coordinates: [4,365,482 / 4,367,480] on scaffold KhC3

Transcription start site is based on the start of the first exon of the KH transcript model.

Show sequence

Length: 1,999


TTCAATGCTTTGTCTGCAATCGCGACAGCTTTAATCACACCAGGGTCATTAGAATGAAAC
ATACCACCACTTCTAAACATCGGGGTAGTGGAACCTGAGAGTTGGATTATAAATAAAGCA
TTCAAGTTTAGCAGGTGTTTAATAGTTATTTGTAGACACAAATTGAATAAATAGGCATTG
TAGTGCCATCTTGTTGTAGCAATGAAGAATGAAAGCATTTTGTAAGCAGTTGATTTCAGT
TAAATTGAATACACATGATACATTATCAAATACATCTTTGCTGAATAAGAACAAATAATT
CTTTTATTTTCAAATAAAGTAATTTGAAAAGAAATAAAGGCCTAACAATTATAAACGAAA
GAATATTACTAATTTTAACCTTTAACAAAACAAAAAAAACTTTTAACCATTATATTTCTT
TGCTTGATGAGCTTTCACCCACGCACGAGAAGGAACGTCTTCGTAAAATTGAACGTGAAC
TTCAGAAACAACGTCACGTTTCTTCTTTGTATGACATAACAATGCTGGGTGTTTGCAAAC
AATAGCTGGCCACCATGGATAGCCTTCTACTTGCGCCCATACAATAGCACCTTCCTCAAA
TTCTGATTGTTGCTGTTTGCTGTGAACCACAATGTTATGTTAGAGTAGTTGAAGTGAATG
AACGGAATGGGAAAATAATAGACAATATCTTTAATGAATTAAAGGCACTATAATGAATGA
ATGAATGTAACTTACTTTATCCTCGCGTGGCCGGAAAGCGACAGTCGTTATAACACGGGT
TTAACACCTCGTGCCAGATTACGAGTTACTATGTATGTTACTTTGTGGGTAATTATTTTT
GTTTGGATATGGTTACAGGCAAGCGCGCTAACCACTACGCCACGGCGCCGGACGAATGTA
GAATGTTTTGGTTTGTTACATATTAGGTTGGTGGAAAGTGTTAGAATTTGATACTGGTAG
TTTAGGATTATAAGTTAGAGGTAAGTTAACATAGGGGGTTAGTATTTATAATGAGTTATA
CGCTTATAGCGGTCAGGTAACATGGAAGAACTCTTCATTAAAACCAAAATAAATGCAATA
TATTATGCACACTTAGATTTAATCATATGCAAAACTCAGAAAACGCACTTACGATTTGGC
TTTTTTATTTGTGGTAGACGGGCTTGCCGATTTATTGCTTTCATGGAGCGGTTTGACCGA
AGGACAATTATCTGTTTTCACATTTTCGTGTTTCTTTTGTTTTGCAGACGGTGATTTCAC
GAAATAGTTAAACAGATTCTTTGGCATTTTGGACTATAAAAAATGTATGTGTTTAAGTTG
CTTCGTTCGTAAATACAACATTATCGACATTAAAACTTAGAAATACAGTAAAACGCAAAT
CATAACAAGTATGCGAATTTCATGCTGCGGCATTACTGGCGGGAAAACAGTGGGGGTTGT
GCTCTTTTATTGACATGCTGTATAAAGTTTAACTTTGTTACAAGGAAAATCGGTTCGATT
TCTTTTAAATCAAACGTAAATTGTATTTTATGTTTTAATAATATATTTACAAATGCTTGA
CACTACCAATTATACGTTTGAGGCTAAGCGATAATTGGCTTTAAATTAAAGAATCGCAGG
TCGGCTTGTTGCGAATTAATTAATCTACCGTACCTTCAAATATGAAGACAATTTTCAATC
AAGTGTAAGGATACACTTTCTGTATTTGAAATATGAAAAACTGTAAAACGCTTGGCGTAC
ATGTATGCTTATCTTCTTGAACTATTTACAGCAATCTTGCAGCAGGCTTACTACGTCATT
AACACGGAGAATGACAGCCGTCTGATTGTTCGGATGGACAACAGACAAACCAGCAAAAAC
AAAGCATATACGAAACTATTATCATGTTTGGTTATATGTAAACTGTAGAAAACATCATAG
TAGGCCTACGTAATATTTAAGTACAACTTGTTGGTAAAAATGTTTAAACGATTCTCCAAC
ATCGAAAGTGTACACAACT

Reference(s)

Brown et al. (2007). Functional architecture and evolution of transcriptional elements that drive gene coexpression. Science 317(5844):1557-60

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