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CIS-REGULATION

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  1. Region 'REG00000505'

Cis-regulatory Region

Name

Ci-tropomyosin 3 -102/82 Tbx6-3 mutated

Short name

n/a

Region ID

REG00000505

Status

Curated

Origin

engineered region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Christopher D. Brown (2009-12-09)

Annotator

Clara Degos (2009-12-10)

Curator

Delphine Dauga (2010-02-26)


Description

Transcription start site is based on the start of the first exon of the KH transcript model.


Construct 1406. This construction is mutated in the last Tbx6 regulatory site.

Overview of functional TF binding sites in this region

4,367,4824,367,665

Motif Name Binding Factor(s) Sequence Position in Region Comment
1 T-Box n/a TTCCTCACC [-102 / -94]
2 bZIP n/a TGACCTAA [-82 / -75]
3 bZIP n/a TGACGTCA [-70 / -63]

Sequence

Aniseed Coordinates: [4,367,482 / 4,367,665] on scaffold KhC3

Transcription start site is based on the start of the first exon of the KH transcript model. Tbx6-3 Binding site mutated (TTATCACTT) was replaced by "-".

Show sequence

Length: 184


TTCCTCACCTCTATATAGAATGACCTAATTGATGACGTCAAGCA---------CTACATT
GGCTATATAAGAGCGAAGTTGCCTTGTTATGCATCACACACAGTCGATTCTCACTCCACA
GCAGCACATTACTTCAACTAACTTGCAAAATGGAATCAATCAAGCACAAGATGGAAGGTC
TTAT