- Region 'REG00000505'
Cis-regulatory Region
Name
Ci-tropomyosin 3 -102/82 Tbx6-3 mutated
Short name
n/a
Region ID
REG00000505
Status
Curated
Origin
engineered region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(extended_promoter)
Author
Christopher D. Brown (2009-12-09)
Annotator
Clara Degos (2009-12-10)
Curator
Delphine Dauga (2010-02-26)
Transcription start site is based on the start of the first exon of the KH transcript model.
Construct 1406. This construction is mutated in the last Tbx6 regulatory site.
Modification of Ci-tropomyosin 3 -102/82 by substitution
- Ci-tropomyosin 3 -2102/82 REG00000473 [ regulatory_region (extended_promoter) ]
- Ci-tropomyosin 3 -953/82 REG00000491 [ regulatory_region (extended_promoter) ]
- Ci-tropomyosin 3 -113/82 REG00000492 [ regulatory_region (extended_promoter) ]
- Ci-tropomyosin 3 -102/82 REG00000493 [ regulatory_region (extended_promoter) ]
- Ci-tropomyosin 3 -89/82 REG00000494 [ inactive_region ]
- Ci-tropomyosin 3 -102/82 Tbx6-2 mutated REG00000502 [ inactive_region ]
- Ci-tropomyosin 3 -102/82 CRE-1 mutated REG00000503 [ inactive_region ]
- Ci-tropomyosin 3 -102/82 CRE-2 mutated REG00000504 [ regulatory_region (extended_promoter) ]
- Ci-tropomyosin 3 -102/82 Tbx6-3 mutated REG00000505 [ regulatory_region (extended_promoter) ]
- Ci-tropomyosin 3 -102/82 Tbx6-2>MyoD REG00000506 [ regulatory_region (extended_promoter) ]
- Ci-tropomyosin 3 -102/82 REG00000493 [ regulatory_region (extended_promoter) ]
- Ci-tropomyosin 3 -953/82 Tbx6-2 mutated REG00000501 [ inactive_region ]
- Ci-tropomyosin 3 -500/32 REG00000635 [ regulatory_region (extended_promoter) ]
- Ci-tropomyosin 3 -113/82 REG00000492 [ regulatory_region (extended_promoter) ]
- Ci-tropomyosin 3 -2102/-103 REG00000510 [ inactive_region ]
- Ci-tropomyosin 3 -953/82 REG00000491 [ regulatory_region (extended_promoter) ]
CONS00000476: pCi-tropomyosin 3 -102/82 Tbx6 mutated -59::LacZ
4,367,4824,367,665
Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment | |
---|---|---|---|---|---|
1 | T-Box | n/a | TTCCTCACC | [-102 / -94] | |
2 | bZIP | n/a | TGACCTAA | [-82 / -75] | |
3 | bZIP | n/a | TGACGTCA | [-70 / -63] |
Aniseed Coordinates: [4,367,482 / 4,367,665] on scaffold KhC3
Transcription start site is based on the start of the first exon of the KH transcript model. Tbx6-3 Binding site mutated (TTATCACTT) was replaced by "-".
TTCCTCACCTCTATATAGAATGACCTAATTGATGACGTCAAGCA---------CTACATT
GGCTATATAAGAGCGAAGTTGCCTTGTTATGCATCACACACAGTCGATTCTCACTCCACA
GCAGCACATTACTTCAACTAACTTGCAAAATGGAATCAATCAAGCACAAGATGGAAGGTC
TTAT