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CIS-REGULATION

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  1. Region 'REG00000493'

Cis-regulatory Region

Name

Ci-tropomyosin 3 -102/82

Short name

n/a

Region ID

REG00000493

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Christopher D. Brown (2009-12-09)

Annotator

Clara Degos (2009-12-09)

Curator

Delphine Dauga (2010-02-26)

View position in WashU

Description

Transcription start site is based on the start of the first exon of the KH transcript model. This region corresponds to construct 1489 in the paper.

Hierarchy of Regulatory Regions

Modification of Ci-tropomyosin 3 -113/82 by deletion

Regulated gene(s)

KH2012:KH.C3.661 (TPM1; TPM3; TPM4)

Construct(s) made to test this region

CONS00000464: pCi-tropomyosin 3 -102/82::LacZ

Show in situ data
Overview of functional TF binding sites in this region

4,367,4824,367,665

Motif Name Binding Factor(s) Sequence Position in Region Comment
1 T-Box n/a TTCCTCACC [-102 / -94]
2 bZIP n/a TGACCTAA [-82 / -75]
3 bZIP n/a TGACGTCA [-70 / -63]
4 T-Box n/a TTATCACTT [-58 / -50]

Sequence

Aniseed Coordinates: [4,367,482 / 4,367,665] on scaffold KhC3

Transcription start site is based on the start of the first exon of the KH transcript model.

Show sequence

Length: 184


TTCCTCACCTCTATATAGAATGACCTAATTGATGACGTCAAGCATTATCACTTCTACATT
GGCTATATAAGAGCGAAGTTGCCTTGTTATGCATCACACACAGTCGATTCTCACTCCACA
GCAGCACATTACTTCAACTAACTTGCAAAATGGAATCAATCAAGCACAAGATGGAAGGTC
TTAT

Reference(s)

Brown et al. (2007). Functional architecture and evolution of transcriptional elements that drive gene coexpression. Science 317(5844):1557-60

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