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CIS-REGULATION

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  1. Region 'REG00000491'

Cis-regulatory Region

Name

Ci-tropomyosin 3 -953/82

Short name

n/a

Region ID

REG00000491

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Christopher D. Brown (2009-12-09)

Annotator

Clara Degos (2009-12-09)

Curator

Delphine Dauga (2010-02-26)

View position in WashU

Description

Transcription start site is based on the start of the first exon of the KH transcript model. This region corresponds to construct 1280 in the paper.

Hierarchy of Regulatory Regions

Modification of Ci-tropomyosin 3 -2102/82 by deletion

Regulated gene(s)

KH2012:KH.C3.661 (TPM1; TPM3; TPM4)

Construct(s) made to test this region

CONS00000462: pCi-tropomyosin 3 -953/82::LacZ

Show in situ data
Overview of functional TF binding sites in this region

4,366,6314,367,665

Motif Name Binding Factor(s) Sequence Position in Region Comment
1 T-Box n/a TACACAACT [-112 / -104]
2 T-Box n/a TTCCTCACCT [-102 / -93]
3 bZIP n/a TGACCTAA [-82 / -75]
4 bZIP n/a TGACGTCA [-70 / -63]
5 T-Box n/a TTATCACTT [-58 / -50]

Sequence

Aniseed Coordinates: [4,366,631 / 4,367,665] on scaffold KhC3

Transcription start site is based on the start of the first exon of the KH transcript model.

Show sequence

Length: 1,035


TGTGGTAGACGGGCTTGCCGATTTATTGCTTTCATGGAGCGGTTTGACCGAAGGACAATT
ATCTGTTTTCACATTTTCGTGTTTCTTTTGTTTTGCAGACGGTGATTTCACGAAATAGTT
AAACAGATTCTTTGGCATTTTGGACTATAAAAAATGTATGTGTTTAAGTTGCTTCGTTCG
TAAATACAACATTATCGACATTAAAACTTAGAAATACAGTAAAACGCAAATCATAACAAG
TATGCGAATTTCATGCTGCGGCATTACTGGCGGGAAAACAGTGGGGGTTGTGCTCTTTTA
TTGACATGCTGTATAAAGTTTAACTTTGTTACAAGGAAAATCGGTTCGATTTCTTTTAAA
TCAAACGTAAATTGTATTTTATGTTTTAATAATATATTTACAAATGCTTGACACTACCAA
TTATACGTTTGAGGCTAAGCGATAATTGGCTTTAAATTAAAGAATCGCAGGTCGGCTTGT
TGCGAATTAATTAATCTACCGTACCTTCAAATATGAAGACAATTTTCAATCAAGTGTAAG
GATACACTTTCTGTATTTGAAATATGAAAAACTGTAAAACGCTTGGCGTACATGTATGCT
TATCTTCTTGAACTATTTACAGCAATCTTGCAGCAGGCTTACTACGTCATTAACACGGAG
AATGACAGCCGTCTGATTGTTCGGATGGACAACAGACAAACCAGCAAAAACAAAGCATAT
ACGAAACTATTATCATGTTTGGTTATATGTAAACTGTAGAAAACATCATAGTAGGCCTAC
GTAATATTTAAGTACAACTTGTTGGTAAAAATGTTTAAACGATTCTCCAACATCGAAAGT
GTACACAACTGTTCCTCACCTCTATATAGAATGACCTAATTGATGACGTCAAGCATTATC
ACTTCTACATTGGCTATATAAGAGCGAAGTTGCCTTGTTATGCATCACACACAGTCGATT
CTCACTCCACAGCAGCACATTACTTCAACTAACTTGCAAAATGGAATCAATCAAGCACAA
GATGGAAGGTCTTAT

Reference(s)

Brown et al. (2007). Functional architecture and evolution of transcriptional elements that drive gene coexpression. Science 317(5844):1557-60

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