Login
Help

CIS-REGULATION

Submit your Data

  1. Region 'REG00000489'

Cis-regulatory Region

Name

Ci-tropomyosin 1 -62/130

Short name

n/a

Region ID

REG00000489

Status

In Process of Manual Curation

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Christopher D. Brown (2009-12-09)

Annotator

Clara Degos (2009-12-10)

Curator

Delphine Dauga (2010-02-26)

View position in WashU

Description

Transcription start site is based on the start of the first exon of the KH transcript model.
Construct 910

Hierarchy of Regulatory Regions

Modification of Ci-tropomyosin 1 -72/130 by deletion

Regulated gene(s)

KH2012:KH.C3.814 (TPM1; TPM3; TPM4)

Construct(s) made to test this region

CONS00000458: pCi-tropomyosin 1 -62/130::LacZ

Show in situ data
Overview of functional TF binding sites in this region

4,231,8664,232,056

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [4,231,866 / 4,232,056] on scaffold KhC3

Transcription start site is based on the start of the first exon of the KH transcript model.

Show sequence

Length: 191

CATCGAAACTTGACCTAAATCTGGAGGCTTATAAAAGGGGACGTGGGCACTCGGCAATAC
ATCAGTTGCATACTACCTTCACAGTAAGTTCTTATATCTTTTCTATTGTGTTTAAAACCA
CAACCTCTAAAATGGAAGCTATCAAGAAGAAGATGACCATGTTGAAATTGGACAAAGAGA
ATGCACTCGAC

Reference(s)

Brown et al. (2007). Functional architecture and evolution of transcriptional elements that drive gene coexpression. Science 317(5844):1557-60

Back to Top