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CIS-REGULATION

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  1. Region 'REG00000484'

Cis-regulatory Region

Name

Ci-CRALBP -1525/406

Short name

n/a

Region ID

REG00000484

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Kusakabe team (2009-12-09)

Annotator

Delphine Dauga (2010-01-11)

Curator

Delphine Dauga (2010-02-24)

View position in WashU

Description

Conversion to aniseed format of DBTGR database entry from Kusakabe team.

Transcription start site is based on the start of the first exon of the JGI transcript model.

Hierarchy of Regulatory Regions

Regulated gene(s)

KH2012:KH.C11.439 (CLVS1; RLBP1; TTPAL)

Construct(s) made to test this region

CONS00000454: pCi-CRALBP -1525/406::EGFP

Show in situ data
Overview of functional TF binding sites in this region

2,432,8682,434,799

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [2,432,868 / 2,434,799] on scaffold KhC11

Sequence from JGI V1.0.

Show sequence

Length: 1,932

AATACGGCGAAAAGTTCCAGCCTGTACATACAGAACAGTTGTTTAATATATAACCACTCA
TACGCTTGCACTTCGTAATTCTCAATATTTATTCTTATGGTTTATTTTTGCAAAACAGTT
ATTTACAAATCCTCTAGTAGTGATTATTTTTGGTATAGGGTTTTTTAAAGTAAATCATAC
TTATTACGTAAAAGTTTTACAATTTTAGGGCGCGTTGTTAAAAATCGGTTATAAAACAAT
GTTAACATTTATTGAATAAAAGACGTGGCTGTTAAACCATAGTATACTAACTTGTTTAGT
ATACTCTGTTCAAACAAAACCGCTGCTGCTATTGTTATACTTTCACCAAGTTATACCTAT
TGAAAACAAGCCTTACCATTGCAGATGTCGTCTGTGTAAGTCTTCAGATGGTTGCAGGGA
AATGAATGGGAACATATGGAGTTTTAATATCAACAACCAACCAACGTTCTTCTTTATGTG
TGCATGCGATCCTCGCGCATGTTCATACAATTAATCCAAATTATTGTTTTCATGGGTCGA
CGCATTGAACCACAAATGATGCTTGCGCATTGACGTTAATTCAGGTCACATGTCGATCGA
AAGCGGATCGGAGAAATCTTAGATAAAAGAGTCGGATTATGAATTTAACATCTCAGCCCT
TTAATTGCGTTTTTAATTTCCGAAATGGCTACTGGATAATTTTCGTTTTGTGTTTGTGTT
ATCTACATGCATTTCGACGGTGGGGACAATTACTTTCGTGCTTGTTCAAATGTAGGCCTA
CGGTGGGAGTATATTGTTGTACAGGCCTCCGCATACTACTTAGTACAACTTGATTAATCT
ATTGACATGTCTTTATTACTTCGAACACCACAATATTTCATATAATCGCATTTAGCATTG
CTCATTGTATAGTATAATGTGGAGGTAGATAGGACGCCGTTTTATTATTGTATTTTCTCG
GCGAATTTGGTAGAAAAAAAAACAAAACAAAAAAAAACATTTAAAGAAATATAAAACTGT
ATCCTCACGACTCTCATAAGACCGCTGTTAATTGTTTAAAATACGATTCGGATATTTATT
GGATATTATGCCTATATGGGGTAAAAGTGTTCCGTCTTCTGAACTATACATTGCCTACAT
GCGACCACAGATCGTTGTTTTTTAATTTTTTCAACTAACCAACACGGTCGTGAAGATTCA
ATAACCGTGGAATTCATGTTTACTACAATTTATCACTACCCTCGTGTGTCTTTAATCCCA
GCAGCAAACGACCACTAGTATGCTTCTGCTTTGGCAGTGTATTTTAAAGTAAAACGTTGA
GAACTGAAATTTCATAAACTCCATGTATTCATGTTTCAAAGTCTAGTTATCTATTAATTC
GTAGACGTAGTTGAATTTCTTGTTATTAAATAAGTTGTTTAAAATTTACATTTAAAATTC
ACAACTACGTAATAACGAGTATTTCTAAAAACTAGCAAAATAATAAATATTTTGACGTTT
TGCAATTTATAGTTGCACTACGCGTCGCTTTCATCCACTTTCATCTAACTAATATTATTT
TTCAAATTAAATTGTAGGCCTGTTAAAAGATTTCTATGTTTCTCTTTGCATCAGTGATTT
AAGTGCGGAAAATTTAAAAACCTGATAAAAGCTTTGTGCGGATTTGTTTTGTTGTTGTGA
GTGCTTTTGTTTCACGTTTTTGCTGCTCGCACATGTATATATACTTTAATATCATTAACG
TTTCTTCACAGCTGTTATTACACAGTTTGAGAGATTATTTCTTGCATTCGGGCACGAGGT
GCATAAAACAGAACACCCGTGTTATAACGACTGTCGTTGTCCCGTCATGCGAGAATAAAC
ATTCAATCATTCTTTCAGTGTATTAGGTTTTTTAAACTGTAATTCAAATATGACTGCAGT
TCCAATACCGCG

Reference(s)

Sierro et al. (2006). DBTGR: a database of tunicate promoters and their regulatory elements. Nucleic Acids Res. 34(Database issue):D552-5

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