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CIS-REGULATION

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  1. Region 'REG00000482'

Cis-regulatory Region

Name

Ci-BCO -2326/-328

Short name

n/a

Region ID

REG00000482

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(complex_region)

Author

Kusakabe team (2009-12-09)

Annotator

Delphine Dauga (2010-01-11)

Curator

Delphine Dauga (2010-03-12)

View position in WashU

Description

Conversion to aniseed format of DBTGR database entry from Kusakabe team.
Transcription start site is based on the start of the first exon of the JGI transcript model.

Hierarchy of Regulatory Regions

Regulated gene(s)

KH2012:KH.C9.224 (BCO1; BCO2; RPE65)

Construct(s) made to test this region

CONS00000453: pCi-BCO -2326/-328::EGFP

Show in situ data
Overview of functional TF binding sites in this region

5,093,1005,095,098

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [5,093,100 / 5,095,098] on scaffold KhC9

Sequence from JGI V1.0.

Show sequence

Length: 1,999

AGACACCAGACTCAGCAACGCAACAATTACTCGCTAAAGTCACGGCTATAGCTGCCGAAT
GACGCGTACTATAAATACATACGCATTAACTTGTTGTCCCATAAGGATAATCATATTTAC
TGCATCTTCCACTATGTGCAATTTCCACATTGCTTGAATGTTCACTGTGATTTCTCATGT
CTATGCATTGTTTCAAAGGTAAAATAACAGCTGGTGGCAACGAACATTAATCTCCTACTG
CATGGCTTAAGTGGTATAAACGTATGTACAACCTTCTTATGTACTGACCTTGCCATGCTA
TGCCATCAGCATATGTCTTACTTGCATACACTCTAGTATACTTAAGTGTGATAGAAAAAA
AACAAGGACACACTCGTCAGTCCTCGTTAATTTTCATTTCCTATAATAATACAAACTTAA
GACAAAAACTGAATTATTGCATTAACTTATTCTGCATAAGCTACAATAATCATAGCTTAT
CTCAGCATGCCTGCTGCTAAATAGCTTGTTTGGTTTCGAGTTATTTTGTCCTCAACAATT
TCGTTGCCGTGTTTCGTTCACTGTGATATATCTCGCAAGCTGCAAACATTATATTTCTTC
AAATCCACAAAACGTTTGCAATGTCTCGTCGTTTTGCAAGTGCTGTTTGCGAAAAAAAAG
TAATAAAGAGGAAAGTTTCTCATTCATTAAGATGTATTAAGATACCATAAGGATATGTTG
CTACGAAAACATAACAGACAAAAATATACTCCATTCAATGGTATATATAATAAAATATAT
TTTATTTGATTTTTGTCTGTTAGGTTTCGTAGCTTCAGATCTCAACTGTATTTCTTTACA
TGGGAATCGTTCAACTCTATGAGCGCCTGATAAGGGTCAAATTCGCGGAATTTATTACAG
TTAGTTTATTTCAGTCTCCACTGTGTCTATCGGTCGTAGTAAATGCCAAATTCCAAACCT
TAACTTGCACCACATTCCAGTGTTATAGTTACGTATAGGCACTACATTGAAAAGCTTATA
AATATACTACATGACAAAGATGTAACTATGCCAGCCAAATTTGTTTATGTTTATTCACAA
TCAGTTAGCAATGGTATAGGAGACTCGTGAGAATATTGTTTTATAACTTTTACTGTTCTT
TGTTTATTACCAAATAGGGCGAGAAAATAGAATAAAAAGATATTCCTTTTCCCCCCAACT
TACTAGATATATTGATAAATAATCAAGTGCAATGTAGCAGCATAATCGTCCTCTTTAGAT
CGCGCTAAGGACGTTGTATAATCCGCCCAACGCAGGTTTTCTAATTAAAATTTCGATCTC
TAAATCTAAATTCCGGGGCGAGCTGATCAATGAGATTGCGGCAAAAACGTCTCCCGCTGA
TTGTAGAATGAGGTCGATAACCAAATGCGATCACACAATCACTAACGTGAACACAAGTCG
TTCAAATCCGATCTTCAGTGTTGAATATGAAAACGATTATAGTCGACAGTAAAAGAAAAG
AGAACAGATCGCCAGATTTTCAATATGTATAAATCTGTAAGCGGATTGTAAAACGAGAAA
GAAGGTAAATTGATGTATAAACCAACCAATAACTGAGGTTTCTACAGTGATTGTTTAAAA
CCAGTCGACGTGTCTGTTTTAGCGTTTGTTGTCGATTTTCTTGAGTTGGAAACATAGAAT
AACAGAAATAGAATAACTAGAATAATTCATACAGCTTTGATATAGTAGGATGGAGAAAGA
TTGGACACCTTTTACCACACGATATTCAACTATTCTGATCTTGTTTTAAACAATTAAGAA
CTGTCTATGTGGGTGTGAGGATACAGTTTTAAAATTCTTCGGATGTTCTTTATTCACTAC
CAAATGGGGCGTAAAAATAGAACAAAAAAGTGTCCCATCTCCTCCCAGACTTCTATATAT
TCCTAGTTTAACATCCTATAGGTTCAGATTTTGCTGAATAGGCATTTTTAACGTTTTAAA
ACAACAAGTCCCATAGTAA

Reference(s)

Sierro et al. (2006). DBTGR: a database of tunicate promoters and their regulatory elements. Nucleic Acids Res. 34(Database issue):D552-5

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