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CIS-REGULATION

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  1. Region 'REG00000480'

Cis-regulatory Region

Name

Ci-tropomyosin 1 -109/130

Short name

n/a

Region ID

REG00000480

Status

In Process of Manual Curation

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Christopher D. Brown (2009-12-09)

Annotator

Clara Degos (2009-12-09)

Curator

Delphine Dauga (2010-02-26)

View position in WashU

Description

Transcription start site is based on the start of the first exon of the KH transcript model.
Construct 954

Hierarchy of Regulatory Regions

Modification of Ci-tropomyosin 1 -186/130 by deletion

Regulated gene(s)

KH2012:KH.C3.814 (TPM1; TPM3; TPM4)

Construct(s) made to test this region

CONS00000450: pCi-tropomyosin 1 -109/130::LacZ

Show in situ data
Overview of functional TF binding sites in this region

4,231,8664,232,102

Motif Name Binding Factor(s) Sequence Position in Region Comment
1 bHLH n/a CAGCTG [4,232,062 / 4,232,067]
2 T-Box n/a CATTACCACCTT [4,232,079 / 4,232,088]
3 bZIP n/a TGACGTCA [4,232,089 / 4,232,096]

Sequence

Aniseed Coordinates: [4,231,866 / 4,232,102] on scaffold KhC3

Transcription start site is based on the start of the first exon of the KH transcript model.

Show sequence

Length: 237


ACCATGTGACGTCATTACCACCTTAGACCTGTCAACAGCTGTCTGTCATCGAAACTTGAC
CTAAATCTGGAGGCTTATAAAAGGGGACGTGGGCACTCGGCAATACATCAGTTGCATACT
ACCTTCACAGTAAGTTCTTATATCTTTTCTATTGTGTTTAAAACCACAACCTCTAAAATG
GAAGCTATCAAGAAGAAGATGACCATGTTGAAATTGGACAAAGAGAATGCACTCGAC

Reference(s)

Brown et al. (2007). Functional architecture and evolution of transcriptional elements that drive gene coexpression. Science 317(5844):1557-60

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