Login
Help

CIS-REGULATION

Submit your Data

  1. Region 'REG00000478'

Cis-regulatory Region

Name

Ci-tropomyosin 1 -2311/130

Short name

n/a

Region ID

REG00000478

Status

In Process of Manual Curation

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Christopher D. Brown (2009-12-09)

Annotator

Clara Degos (2009-12-09)

Curator

Delphine Dauga (2010-02-26)

View position in WashU

Description

Transcription start site is based on the start of the first exon of the KH transcript model.
Construct 868

Hierarchy of Regulatory Regions

Modification of Ci-tropomyosin 1 -116/130 by deletion

Regulated gene(s)

KH2012:KH.C3.814 (TPM1; TPM3; TPM4)

Construct(s) made to test this region

CONS00000448: pCi-tropomyosin 1 -2311/130::LacZ

Show in situ data
Overview of functional TF binding sites in this region

4,231,8664,234,306

Motif Name Binding Factor(s) Sequence Position in Region Comment
1 bHLH n/a CAGCTG [4,232,062 / 4,232,067]
2 T-Box n/a CATTACCACCTT [4,232,079 / 4,232,088]
3 bZIP n/a TGACGTCA [4,232,089 / 4,232,096]
4 bZIP n/a TGACGTCA [4,232,104 / 4,232,111]

Sequence

Aniseed Coordinates: [4,231,866 / 4,234,306] on scaffold KhC3

Transcription start site is based on the start of the first exon of the KH transcript model.

Show sequence

Length: 2,441


AGTGGGTGGAAAGCCAAGGACGCATGTCTTGTGGCGCAGTCACCAGAAACGTGGCGTGAG
GCGCAGCCACGCCGTTGTTTCATGCCGCGCCAGGGGACACCTAATTTGTGTGAAAATACG
AATTGGTCCTCGCTGTCCCCTGACCCTAAAACTGAGTTAATTTCCGTGAAACCAGACGGC
CGAATTAGGTGATAAAATTTTCAGTGTTTCCAGTTTAAAAATAACAGTGTTGACTGACAC
TTGGAAGCGAGCTTAGATACCTCACTTCAGTTGCAATTCCTGTCCAACTAAACATTACTT
ATCTGCTACCTTTGCTTTTTATTTTGTTTTTTTCTATTTTCGGAACCTAACGTAGCGCAA
CTCAGCTAAGCGTAACAACTTTAGTTTCATAAACTCTTATAAGTAGTATAGTAATTAGGA
AGCTTAGCTGGCATGCGTTATGTTATCTTTTTTAACTATATCAACTTTACCTAGAAAGTT
ATGACTATTACAAAATAACCCAATCACTTTAATTAAAATAATCTTTTTTATTTTAATAAT
ATTCCAGCAATTAAAATTAAATTTTTTTTTCAATTATCTTGGAAAACATTAAGTACTGTG
ATGTCACTGTCGATAAAATGAATTCAATCAGTTCTTAATTATGTTCATAGTACGAAAGTG
AATTCCATTTTGGCCTTGCTCATTTTTCTAGTTGTCCTTTCTCATTGATTATTATTCAAT
TATAATGAATTGTCCAGTGTGAATTGACGCAAAAATGCTTTTTCTTTGTTTAAGAAAAGT
AGTTTTCCCACAAAATTGTTACTTCATGTTTAATTTTTCTATAATCATAAAAATGAGTTG
TTTTCGGTTAGTATTTATTCAAAAAAAAATTAGTTTCATTCTTCACTCGTATTCATGCGT
ACTCGCACGTAGTTCCAAGCTGCCATTGCATCGACCGTAGTGAATACAACCGTGCTAGTT
TTATACACCGTCCCATATGCCGCACTATATATGTAATAAAATGCAGTACTTTAAAGAAAT
GTGGTTTTCGGACACTGTATCTCAGCACTATATATAGTAGGGTGGGGGGAATGAGGCACT
TTTTCATTCTATTTCTCGTGCGATTTGGTAAAAAAACAAAGAACATTTCAACAATTATAA
CACTCGCATAGACCGTTGTTCATTGTTACAAACACGATCAGGACTTTTGAATATGTGCTA
AAGATGTCGCGTTTTCGTCTGACCTCACCCTACTACACATTAAACTGTGTTTTCCACAGC
ATGGGCTATTCACATTCGAGATTATACCTTCGATTCCATAGTTTTAATTTATTATTTCGT
AGGGGAAGATTTTAGTTCGATAATAGCAGTTTGAAAAAGATTTCGATTTTCACGCAATTT
TAAAATTGTTTCTTTGTTTAAGTTATGTTTTCCTATAAGGTAGGAGTTTAGTTCGAACAG
AACTGTTTTGAGTTTTAGAATAAGATTTCGGTTTTCACTCAACTTTACAATTGTTTTCTG
TTTCTTTTAAACTGAAATCCCTATGTTAAGTTGATGGTGATCATTTATTTTTCCTCCTCT
TAAAATAGTTTTTGTGATGTTGCGGACCTATACGTTCGGGATTCGTATTTATCTCGTAAC
ATACGAGACACGTATTTTGTAAGTATATATGATGTTTTTTGTTTGTATATATGGTTGATA
ATTTGGACAACGAAGTTCTGAAGCAATTCTTGAAGTGCGTGAACGAACAACGACTTATTT
ATCCTCGCCTGGCGGTGCAACGGCAGTTTTCACAACATGGGTGTTCTGTTTTATACACCT
TGTGACCACTTACGAGTAACCGCGAATGTAAATTTGTAGGTGAATTTTAAGGTCATACAA
CAAATGAAAGAATCCCCCTAAAATAATCACTCGCAAAGTTACATACATAGCCTACATGGT
AACTCATAAGCGGGTACCATCAGGTGTATGCAACAGAACATCTGTGTTATAACGACTGTC
GTTTACCAGCCACGGAAGATACAGCAAATTACGTTATATTTATTCAGCCCCAGCTACGGT
ACGGGCGCTTTGAGTAATGTGCGTTTTTAAATAAACGAAGCTGTATATAACTTCTTTATT
GTAGAATAGCTAATACAATCCATTGCAAAGAAAGAATCGAAAGAAGAAATGGCGACTGTT
TTTAACAACTTTCCACACCCGCAGGTAAATCTTAATGACGTCAGACCATGTGACGTCATT
ACCACCTTAGACCTGTCAACAGCTGTCTGTCATCGAAACTTGACCTAAATCTGGAGGCTT
ATAAAAGGGGACGTGGGCACTCGGCAATACATCAGTTGCATACTACCTTCACAGTAAGTT
CTTATATCTTTTCTATTGTGTTTAAAACCACAACCTCTAAAATGGAAGCTATCAAGAAGA
AGATGACCATGTTGAAATTGGACAAAGAGAATGCACTCGAC

Reference(s)

Brown et al. (2007). Functional architecture and evolution of transcriptional elements that drive gene coexpression. Science 317(5844):1557-60

Back to Top