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CIS-REGULATION

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  1. Region 'REG00000473'

Cis-regulatory Region

Name

Ci-tropomyosin 3 -2102/82

Short name

n/a

Region ID

REG00000473

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Christopher D. Brown (2009-11-19)

Annotator

Clara Degos (2009-12-09)

Curator

Delphine Dauga (2010-02-26)

View position in WashU

Description

Transcription start site is based on the start of the first exon of the KH transcript model. Region corresponding to construct 1575 in the paper.

Hierarchy of Regulatory Regions

Regulated gene(s)

KH2012:KH.C3.661 (TPM1; TPM3; TPM4)

Construct(s) made to test this region

CONS00000461: pCi-tropomyosin 3 -2102/82::LacZ

Show in situ data
Overview of functional TF binding sites in this region

4,365,4824,367,665

Motif Name Binding Factor(s) Sequence Position in Region Comment
1 T-Box n/a TACACAACT [-112 / -104]
2 T-Box n/a TTCCTCACCT [-102 / -93]
3 bZIP n/a TGACCTAA [-82 / -75]
4 bZIP n/a TGACGTCA [-70 / -63]
5 T-Box n/a TTATCACTT [-58 / -50]

Sequence

Aniseed Coordinates: [4,365,482 / 4,367,665] on scaffold KhC3

Transcription start site is based on the start of the first exon of the KH transcript model.

Show sequence

Length: 2,184


TTCAATGCTTTGTCTGCAATCGCGACAGCTTTAATCACACCAGGGTCATTAGAATGAAAC
ATACCACCACTTCTAAACATCGGGGTAGTGGAACCTGAGAGTTGGATTATAAATAAAGCA
TTCAAGTTTAGCAGGTGTTTAATAGTTATTTGTAGACACAAATTGAATAAATAGGCATTG
TAGTGCCATCTTGTTGTAGCAATGAAGAATGAAAGCATTTTGTAAGCAGTTGATTTCAGT
TAAATTGAATACACATGATACATTATCAAATACATCTTTGCTGAATAAGAACAAATAATT
CTTTTATTTTCAAATAAAGTAATTTGAAAAGAAATAAAGGCCTAACAATTATAAACGAAA
GAATATTACTAATTTTAACCTTTAACAAAACAAAAAAAACTTTTAACCATTATATTTCTT
TGCTTGATGAGCTTTCACCCACGCACGAGAAGGAACGTCTTCGTAAAATTGAACGTGAAC
TTCAGAAACAACGTCACGTTTCTTCTTTGTATGACATAACAATGCTGGGTGTTTGCAAAC
AATAGCTGGCCACCATGGATAGCCTTCTACTTGCGCCCATACAATAGCACCTTCCTCAAA
TTCTGATTGTTGCTGTTTGCTGTGAACCACAATGTTATGTTAGAGTAGTTGAAGTGAATG
AACGGAATGGGAAAATAATAGACAATATCTTTAATGAATTAAAGGCACTATAATGAATGA
ATGAATGTAACTTACTTTATCCTCGCGTGGCCGGAAAGCGACAGTCGTTATAACACGGGT
TTAACACCTCGTGCCAGATTACGAGTTACTATGTATGTTACTTTGTGGGTAATTATTTTT
GTTTGGATATGGTTACAGGCAAGCGCGCTAACCACTACGCCACGGCGCCGGACGAATGTA
GAATGTTTTGGTTTGTTACATATTAGGTTGGTGGAAAGTGTTAGAATTTGATACTGGTAG
TTTAGGATTATAAGTTAGAGGTAAGTTAACATAGGGGGTTAGTATTTATAATGAGTTATA
CGCTTATAGCGGTCAGGTAACATGGAAGAACTCTTCATTAAAACCAAAATAAATGCAATA
TATTATGCACACTTAGATTTAATCATATGCAAAACTCAGAAAACGCACTTACGATTTGGC
TTTTTTATTTGTGGTAGACGGGCTTGCCGATTTATTGCTTTCATGGAGCGGTTTGACCGA
AGGACAATTATCTGTTTTCACATTTTCGTGTTTCTTTTGTTTTGCAGACGGTGATTTCAC
GAAATAGTTAAACAGATTCTTTGGCATTTTGGACTATAAAAAATGTATGTGTTTAAGTTG
CTTCGTTCGTAAATACAACATTATCGACATTAAAACTTAGAAATACAGTAAAACGCAAAT
CATAACAAGTATGCGAATTTCATGCTGCGGCATTACTGGCGGGAAAACAGTGGGGGTTGT
GCTCTTTTATTGACATGCTGTATAAAGTTTAACTTTGTTACAAGGAAAATCGGTTCGATT
TCTTTTAAATCAAACGTAAATTGTATTTTATGTTTTAATAATATATTTACAAATGCTTGA
CACTACCAATTATACGTTTGAGGCTAAGCGATAATTGGCTTTAAATTAAAGAATCGCAGG
TCGGCTTGTTGCGAATTAATTAATCTACCGTACCTTCAAATATGAAGACAATTTTCAATC
AAGTGTAAGGATACACTTTCTGTATTTGAAATATGAAAAACTGTAAAACGCTTGGCGTAC
ATGTATGCTTATCTTCTTGAACTATTTACAGCAATCTTGCAGCAGGCTTACTACGTCATT
AACACGGAGAATGACAGCCGTCTGATTGTTCGGATGGACAACAGACAAACCAGCAAAAAC
AAAGCATATACGAAACTATTATCATGTTTGGTTATATGTAAACTGTAGAAAACATCATAG
TAGGCCTACGTAATATTTAAGTACAACTTGTTGGTAAAAATGTTTAAACGATTCTCCAAC
ATCGAAAGTGTACACAACTGTTCCTCACCTCTATATAGAATGACCTAATTGATGACGTCA
AGCATTATCACTTCTACATTGGCTATATAAGAGCGAAGTTGCCTTGTTATGCATCACACA
CAGTCGATTCTCACTCCACAGCAGCACATTACTTCAACTAACTTGCAAAATGGAATCAAT
CAAGCACAAGATGGAAGGTCTTAT

Reference(s)

Brown et al. (2007). Functional architecture and evolution of transcriptional elements that drive gene coexpression. Science 317(5844):1557-60

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