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CIS-REGULATION

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  1. Region 'REG00000472'

Cis-regulatory Region

Name

Ci-tropomyosin 1 -116/130

Short name

n/a

Region ID

REG00000472

Status

In Process of Manual Curation

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Christopher D. Brown (2009-11-19)

Annotator

Clara Degos (2009-12-09)

Curator

Delphine Dauga (2010-02-26)

View position in WashU

Description

Transcription start site is based on the start of the first exon of the KH transcript model.

Hierarchy of Regulatory Regions

Regulated gene(s)

KH2012:KH.C3.814 (TPM1; TPM3; TPM4)

Construct(s) made to test this region

CONS00000447: pCi-tropomyosin 1 -116/130::LacZ

Show in situ data
Overview of functional TF binding sites in this region

4,231,8664,232,111

Motif Name Binding Factor(s) Sequence Position in Region Comment
1 bHLH n/a CAGCTG [4,232,062 / 4,232,067]
2 T-Box n/a CATTACCACCTT [4,232,079 / 4,232,088]
3 bZIP n/a TGACGTCA [4,232,089 / 4,232,096]
4 bZIP n/a TGACGTCA [4,232,104 / 4,232,111]

Sequence

Aniseed Coordinates: [4,231,866 / 4,232,111] on scaffold KhC3

Transcription start site is based on the start of the first exon of the KH transcript model.

Show sequence

Length: 246


TGACGTCAGACCATGTGACGTCATTACCACCTTAGACCTGTCAACAGCTGTCTGTCATCG
AAACTTGACCTAAATCTGGAGGCTTATAAAAGGGGACGTGGGCACTCGGCAATACATCAG
TTGCATACTACCTTCACAGTAAGTTCTTATATCTTTTCTATTGTGTTTAAAACCACAACC
TCTAAAATGGAAGCTATCAAGAAGAAGATGACCATGTTGAAATTGGACAAAGAGAATGCA
CTCGAC

Reference(s)

Brown et al. (2007). Functional architecture and evolution of transcriptional elements that drive gene coexpression. Science 317(5844):1557-60

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