Aniseed - Cis-regulation

Cis-regulatory Region

Name

Ci-RORb 690bp/941bp

Short name

n/a

Region ID

REG00000449

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Hélène Auger (2009-06-30)

Annotator

Clara Degos (2009-06-30)

Curator

Delphine Dauga (2010-04-12)

View position in WashU

Description

Hierarchy of Regulatory Regions

Modification of Ci-RORb -1649bp/4353bp by deletion

Ci-RORb -1649bp/4353bp REG00000445 [ regulatory_region (extended_promoter) ]

Regulated gene(s)

KH2012:KH.C8.737 (MUSK; ROR1; ROR2)

Construct(s) made to test this region

CONS00000426: pCi-RORb 690b/941bp::LacZ

Show in situ data

Overview of functional TF binding sites in this region

2,707,0782,707,327

	Motif Name	Binding Factor(s)	Sequence	Position in Region
1	Fox	n/a	tgttt	[632 / 636]
2	Fox	n/a	tgttt	[703 / 707]
3	Fox	n/a	aaaca	[764 / 768]
4	Fox	n/a	aaaca	[772 / 776]
5	Fox	n/a	tgttt	[817 / 821]
6	Fox	n/a	AAACA	[840 / 844]

Sequence

Aniseed Coordinates: [2,707,078 / 2,707,327] on scaffold KhC8

Sequence from JGI Version 1 thanks to coordinates in the paper.

Show sequence

Length: 250

GCGACCTCTAATCTAGAATCTGCTCATTGTTTATCCCAGCACCGTCTCTTATGACGTAAC
AATCACGTTGCAGGTGCTAGTCGAGATGGAGACGCACTTGTTTACATCACAATAGCGCGT
ATTGCGTCGTCATAAGTGGTAAGACCGATTCGCGGCGCCAAACAGCCAAACACCTTACAA
TAAATTTAATTTAGAACTTTCTTCCGTTCGGATGTTTATTATTACGCACCAATTAAAACA
AAACATATTT

Reference(s)

Auger et al. (2009). Similar regulatory logic in Ciona intestinalis for two Wnt pathway modulators, ROR and SFRP-1/5. Dev. Biol. 329(2):364-73