- Region 'REG00000446'
Cis-regulatory Region
Name
Ci-Rorb -596/113
Short name
n/a
Region ID
REG00000446
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(extended_promoter)
Author
Hélène Auger (2009-06-29)
Annotator
Clara Degos (2009-06-29)
Curator
Delphine Dauga (2010-02-24)
Transcription start site is based on the start of the first exon of the KH transcript model. Construct used to test this sequence is named BS1/2/3 in the paper. This construct recapitulates the endogenous expression of Ci-Rorb.
Modification of Ci-RORb -1649bp/4353bp by deletion
2,707,9052,708,613
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [2,707,905 / 2,708,613] on scaffold KhC8
Sequence from JGI Version 1 thanks to the primers described in the paper.
Show sequence
Length: 709
TTCCCAATTAGAACACACAGGTAGAAAAATACATTAGAATATCTTTGATTAGACTAGCAA
GATAGGCACCTAATTTCCTATGTTAGTACAACTGGTTTTATAAAATTATAAAAATTTCCT
GCTATAATCGGTTAGAGCAAGGAACGGTGATTATAAACTTGAGCCAAATTCGCTAAAAGC
AAATTGGACGTCGCCTTATCGTTGAACTAAGTCTTGGCAGAGGCCTGTATTGTGTATGGT
CACCCTGGTACAATAGATCCGAACCAATGTGTGTTGACTTTGCAGCGCGTCTAATCGCCA
ATAGCGATAACGTAATGAGATCCGACTGCGGCTCTAATTAGCGCGGACACGGGCGAGAGA
TATTGCCTTTTTCCTACATTTCGTGCCCCACTCCGTAAAAGCGTTTGCGCTTTTCTATCA
CTATACAGTCGAATAAGTGAAACGTGAGCGCGGTTGCTTGTTATGACTTTCTGCTTATAA
TTACTACTTTAATGATTTCGAAATTAGCTCCTTTGCCAGGAGAAGCAAGATAATTGCGTG
AGATTTAAGTGTACGTCTGGTTTCCAGTATTACACGTATGTATCCTATCTTGCAGAATAT
TTTAAGGAAGTATTTTAAAGTACAAGTGTTCGGACAAGACAGAAAGTATCAAAAATCAAA
GTGTTGCGGATATTGACGGAAATGAAAAGACACCATCTGTTATGGAGTC
