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CIS-REGULATION

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  1. Region 'REG00000416'

Cis-regulatory Region

Name

Ci-Pax6 -1.8kb/+1kb 1.7kb/2kb

Short name

n/a

Region ID

REG00000416

Status

Not Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Steven Q. Irvine (2008-06-29)

Annotator

Émilie Carmona (2008-06-29)

Curator

Émilie Carmona (2008-06-29)

View position in WashU

Description

At tailbud stage, this region is able to drive the expression of Ci-Pax6 in sensory vesicle.

Hierarchy of Regulatory Regions

Modification of Ci-Pax6 -2500/7000 by deletion

Regulated gene(s)

KH2012:KH.C9.68 (PAX3; PAX4; PAX6)

Construct(s) made to test this region

CONS00000397: Pax6 -1.8kb/1 1.7kb/2kb::LacZ

Show in situ data
Overview of functional TF binding sites in this region

5,700,6285,704,428

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [5,700,628 / 5,704,428] on scaffold KhC9

Show sequence

Length: 3,801

ATAGTTGGGAGAATACCTTTATATAACTATTTTATTCTTTATTGGCTACCAAATATGAAG
ATAATTAAACATGTTCCATGTTACCCCAACCTACTATACATAAACGTACTAAAACTGTCT
TTATGTTTAAAAAGCGAATTTGTAAATTCGCGCGAAAATTTAAACATCGGAGCCGTAAAT
CATGTGCGCGCGGTCGAGCGTAGGCTGATGCGTTTAATTGTTTTATTCTATGACGTCACA
ATACGAACCGAGAACGAGGCGGGGTGCGCGTATTTTTGAATTGGTTAACCCTCAGTTCGA
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--------------------TTTAAAATATTTCGCCGAAAATGTCCAGAGACAGAAAATG
TAAATTTTCCTAAATCAGAAAAGTCCTTTATATATAACAGTATATGTCTGTCATTAAAAT
AATGTCAGTAAGGTTTAAAATTATAAGGTAAACAATTCATAAAGGCATGCAAAAATTACA
AAGAATATGTCTTGGTGGTAATTAATATGTTTTTTTGTATATTTTTTTAAAGTAGAACGG
GGGAAGACGGTACACCTTTACCACATAATATCTAAACTTTCTAGTTGTGTTTTTAAACAA
TTAACAACGGTGCATGGGAGTCGTAAAATACGGTTTCATATTTCTTTGAATGTTCTTTGT
TTACTACCAAATTGGACGAGAAAACAGATTGAAAAGGTGTCCTATCTCCCCCCACCCTAC
TATATCATTTTATTTATCGTCTGCTTGTTTTAACATATTATCCTGTTTAATTCGACCAAG
GTTTATATTTCAAACATTAACCATCTCGGTTTTCGGTACATAACAAAAACAAGCGACGAC
AAAATAAAATTTCGAAGATATCGCGGTTTCCGAAAGCAAATTCAAAACACGAAAATCGAA
GTCGGGACAACATAACATATGACGGAGCGATAAGAATGAAATTTGGCGCTGACGAACACG
GTAAGGCGGGGATATATTGGGCCTGTAGCCGCAGAGTGTTAATCGTGGAACAGTTGTTTT
ATTTGGCCGGAACTGCGATAAACAGAATGAGTTAATATTTGTTCTGGAGCCGCCGGTGAG
CTATTTCGGTGTTGTCACTTTGCTGATACTTATATTTGCGTGGTGTGGGCACGCGACTCT
GCTGTTATCGTTAAGCGATAGCGGAAAAGCGGCCTTGGAAATGGGTATGTTACTACATTT
GTGAGCAAACAGTTTTATCAGTACGGATCGAATCTTGAAAACAAGCCTAAAATTGGAGTC
TTGTTGTCCGTGGTTTAAACCGTCGTGAAATTGAGTCTACACGAGCAGGTGCAACAGGCA
ACTACTTTCGTACATCTGTAAACTACTTCGGCGAAACTTTTAAATAAAATTTGAATCGAA
ACGTGGCGCGAGACCTCGGGCTCGGAGGAGTGGTGTTCCGTACAATGGCCGACATGGAAG
GGCTTTCCGAATTGCACCAAATCGGTGCGGATTAACGCAACGGGATATCGGCCCGTGGAC
GCCCAAAGTCCCACCGAAATTAATAAGCTAATCCGAAGCAGGTTTCGGAATCGTAACGCA
GTAGTGTTATAGGAACCGTTAGAAAAAAAACTACTTTTGATTTATAAAAACATTCGCACC
ATTTTTAAAGCTAGCAATATTTAAAAAAATTAAAAACGAATTACGATTTTTTGGGGGTAT
AGTTGTAAGTTATTATGGTTTTGAAAAAAGTTTCGCTTTATAACAGCGATTATATAATGC
CGAAACTGCAATGCGTTCGCTGTGCGCGCTAGTCGCCATTTTGATGAATTTCCATCGAGT
CAATATTATGCACGGGAAAAATATTTATACTTATCAAATATAAAGTATAGATGTGAAATA
CAGGTTAATTGTTTCTTATATAAAATAACCGCCCATATTAATATGTTTATAAATTTAAGT
TTTAAACAAAATAAAAAAAACGTTGTTATTTATGTCATAATTTCTATTTTCAGTCACGAA
AACATTTTTCCTCACGAATCAATTTTCTGTCTACTTTACTTTTCCTTTCTGCAACTTTTT
GCTTCTATTTTCAGTCCTTTGACAAAAATCGCTCAAAAACTCTTCAGTATAGACTTAAAT
TTTCCTGAATATTTTGCTGGA

Reference(s)

Irvine et al. (2008). Cis-regulatory organization of the Pax6 gene in the ascidian Ciona intestinalis. Dev. Biol. 317(2):649-59

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