- Region 'REG00000414'
Cis-regulatory Region
Name
Ci-Pax6 -2500/7000 delta 2600/3700
Short name
n/a
Region ID
REG00000414
Status
In Process of Manual Curation
Origin
engineered region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(extended_promoter)
Author
Steven Q. Irvine (2008-06-25)
Annotator
Émilie Carmona (2008-07-01)
Curator
Delphine Dauga (2010-02-26)
At tailbud stage, this region reproduced most of the endogenous expression pattern.
Modification of Ci-Pax6 -2500/7000 by deletion
- Ci-Pax6 -2500/7000 REG00000404 [ no_output ]
- Ci-Pax6 -1.8kb/+1kb REG00000408 [ regulatory_region (extended_promoter) ]
- Ci-Pax6 -0.6kb/+1kb REG00000411 [ regulatory_region (extended_promoter) ]
- Ci-Pax6 -2500/2600 REG00000412 [ regulatory_region (extended_promoter) ]
- Ci-Pax6 -0.2kb/+2.6kb REG00000413 [ regulatory_region (extended_promoter) ]
- Ci-Pax6 -2500/7000 delta 2600/3700 REG00000414 [ regulatory_region (extended_promoter) ]
- Ci-Pax6 -1.8kb/+1.5kb REG00000415 [ regulatory_region (extended_promoter) ]
- Ci-Pax6 -1.8kb/+1kb 1.7kb/2kb REG00000416 [ regulatory_region (extended_promoter) ]
- Ci-Pax6 -2500/7000 delta 1000/3700 REG00000417 [ regulatory_region (extended_promoter) ]
- Ci-Pax6 -0.2kb/+1kb +3.7kb/7kb REG00000418 [ regulatory_region (extended_promoter) ]
5,701,2385,709,428
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [5,701,238 / 5,709,428] on scaffold KhC9
Sequence from JGI Version 1 thanks to coordinates in the paper. Nucleotides deleted was replaced by "-".
Show sequence
Length: 8,192
ATACACATATACATCTGGATTGCTAAGCTGGTATATAGGAATGAATTGGCAGAACTTGAA
TAGGAAAAGGTTTTGTATACAACATGTAGTCTAGTGCCGTGTAGGTATGGGTAAAATAGA
CCATGTTTTTATTCCATTTTATCATCCTATTTAGCAGCAAACAAAGAATATTTATAGAAA
TATACAAATATGTCCAGTAAAAGTGTGTTGTTGATTGTTAAAAATAATGAAAAAAAATCT
ATCTTCCCCCACTATATATATGCATCGGGTTTTAATTTCATACTAAAATATTTATTCATT
ATAACTGTATATATAGGTTATGTGACTCGTAACTCAGGCTAACAGTATATATTGAAATAT
ATTCTATTTTATCTTATGTATAAGATATACGAGAAGATGAGAAAACTGTCATATGATTGA
TTTGTATTTGATTTTTGATTCCGGATTACTTTCTAATTCCATCATGAGCCACGTTTTGTG
CAGTGGAGGGTAAACGTCAAAATATAACACGCGTTGACAGCTTTAATACACATACGGGTT
GTAGCGTTAGCGGGCGACATTTGTGACGTAGGGGATTCAATTTTCGGAGGGCGGGTGGGG
ATTAAAGCAGCAAAAACTAAAAATCGTGTTAAGGCGACGTGACCCGTGTCGGCCTACACA
TGATTAAAGTCTCGGCGCAATCAGAATGTTGTCATATCGCAGATGATGTCGACATCTTGG
CATCAAGGCTTTGATTATTATTTTTTGTAAATAATTAGCCCGCGCGTCGATGCAACTTAT
GGGTGAAATATTTGACATGGGAACCAATACTTTTGCGGCGGTATGGATATTTGTGCTGTT
GTCTTTTTGACAGGGGTTAACGCTCGCTCAATTGAGTTAATGCATTCCAATCCAAAGTGA
CTAACTCTTGAAGCGAAACTGAAAACGGATTCACGCCGATTTACGGATCCGCATATGAAG
GATAAAACACTCTATATGCGTCATTATTTCTCACGGAGCAGAAATCTACTATGATTCAGA
CCTAAAGTATATCCCAAGGAAAGCATTTCTGTTTATATCTGTTTAATCGCGGGTTAAAAG
CGAGCTTAGCACGTTTTTAACTGCTGGTCGAAGCCAGGTATTGGAATCTGAGAGCGTGTG
TAATCTAGCAGAAACTTTAGGACCGAATCGGCTGGCGGAAAGATAAACAATACGAATGCG
GTCGCGAATGGTGAAAACACACCTGCGGAGTTGAGACCTGGAAATCTGTTCTGTATGTTA
CTAAAAAATAACTCGATTTTTGGCATTGCTTCACACGCCTATTGCTGGGGGTGCGGGTAA
AAAGGAAAGAGATATATACGCGGCTGCTTTATGCTGCTGTGTTGGACAACGTCGGCAGCC
AGTTTACCCTAATCCACATGTTCAAATTAATTTCCTTCCAGCTGAGTGGCGAAGTAGCTT
ACATGGTAGCGGGGTAGGGACGTGCACTGCCCGTTGTGAGAAACTATTCTGAGATGGATT
ATCCCGAATCGGTCGTAGACGATAATCGTTTTTCGGGCGAATTGTAAGCAACTGATTTCT
TTGCAAAAAATGTGAATAAAATATCAGTTCATTTGACCCTGCGTTCGGCTTAGGTTAAAC
GTCTTCGTATACTTTGTTTTACAGGCGAAGAATCGTGGCTGAGTTCTGACAGTATATACA
ATGGTAGATTGAAGGACATTGTCCGCGAATACTTCGTCATGGTGCGTGGATTGTTGTCGA
ACAGTCGAGGCCCAGCGGGTTTGTCGGCGCTAAGACCCCATTCATTCCGATGTGAAATGG
AGCGAATGAGGAGAGAAGCAAAAGCTTAAAAATCAATGAGGATAAATCCTCCTCTCGGAG
GCTGTAAGTCGCGGAAGAGAAATACGTTGCGAGAAACTTTCTGCCTCGTCTTTTCCACCT
TCTCTGATTTTTACTGACGATTTTCGTTGATCAACTTGACTTAAAACTTTAGCAAAGATA
TAACTCGAATAAAACATGACCCCAAAACTCTAACGTAGGTATATGCTATGCTCGGCTAAC
CCCTGCTGGGGTGGCAGCTATCGCCGTACAAACGTGAGAATGTGCGCTTATTCAGGCTTG
AAATAGAGTTATGTTGCAAGCTACGGAATGTCAACAGAATTCGCTAACAAACTACTTAGC
TCTGGCCGTGTCACGGATGTCTTTCATTCTCTCCAAAATCGATCGCTCATAATCGAGTAG
GCCGGGTTTTAAGCGAAACTTCGGCGGGGTTTTTGGTCGTCGAGAGCCCGCCGACGGATC
GATGACACGCCGGTATCGATCGCGGTGCAACTTGATTCATAATAACTCGGTTTATCTTGG
AATTAGCTGCAGCGTCAGATAGGAAATGCGGGGCTGGGCTGGCCGGTTGCGGTCGACGGA
TCTTTACGTGACGCGACGGGGCGAGAGATCCAAAGAGCTTTTATTATTTATTTTCGAACG
CGGCTCGGGAATCGTCTTGAAATCCCGTCCAATTAATCATTAATACGGCTGTCAGTGGTC
GGGAAATAGTTTTTATTTTTTCAACTAATGGAAACCAGAGACCCGTTGATGGTTTAAGCT
CAACGTAATTATTTTAGAGAGGCAAACAGAGGTGACAAAGCAAGACAACTTTAAGAAAAT
CCCAAACCACCAAAATCGACGGGCAGCAGTACTTTGCGCTTTTAATGCCGCGTGTCGCCC
ACAGCGCGGGGCAAAGGACAAATTTCTAGTTAAGATTGAAATCAGTACACTTGCCTCCTT
GGCACCGTGGTCGTCGATAATCATTTTAAAAACTCGATAATTCAAAGCGTTGACACGCGG
CGGCTTGCATGTCGACGCGATGATCACACAGAGATAAAGCTAATCCTACGCACAACTGTT
TGGCCCACAAAACTAAAATACTGGTGAAAAATATGGGAAAACCAAAGTAACGAGCAATCT
TGATGAAAAGGTTTTTGCGTAAGTTAAAAAGTAATTAAACCTGCACACACAATCGTGAAA
GCATATTTTTTTACACAGACTTTATAAATTCCAATGCAAACATGACACCCCATGTGTGAT
ATAATTTTCATTTTAAACATTTCCGTTTAAAATTAAAACCACCATGTTTGTATTAAAACT
GATAGAAAACCCGTGTTTTATGCACCCTTATATAAATTCGTTTATAAATACCGCGATTCA
CAAAAGTGACTTTAAATAAATGGACACCATATATATACGTCATTTGTAAGCTAAACAGGG
GTCTTACCTTTCAGTCCCATAAGACCTTCGGCCGCA------------------------
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--------------------------------------------------------GCGA
AACAAAAATGTTTTTTAAATCAGAATAAGTGGTAACGTGTTTTAAATAGGTGTGTACATA
GTATTAGCCCGTGAATATTAGAATTAAAACTGAATCATTTAAATAATCGAGGTAAACTAG
TTAACCTAATGTTTCAATAAAGTTTATGTGTATATATAGTAGATACACCAACGTAACAAA
ACTTTGCTTTTATATATTAGGTTATACAATATTTCTCATATCATTTAAGGTTACAAAGCG
CATTGATTTTCGCACAGAACTTAACCGTAAACAATAAACATACGCGTCGCAAGGAAATAT
AGATTAGGAGTCTTACAGCGTGTTTGGCATATTCCCTTCCCTTACCTAAGACGTTGAATT
GCGCGTCGTTTATTCCCAATAGCCCGCTCGCGCTTGCTTTTAAAGTACAGACATACAGTA
ACAAAAGGGGGATTAGTGATGTTTTAGTGTGTTACTCTAAAGGAAAATGTCACGGTTTGA
CCTGGCTTGTCCAAATTCGTACCAGGTTTTATGAAATATACATAAGAGTTAGTATAACGA
TATAAGGGGTAAAATAGGACACTGTGAGCTCATAATATCCCATATTTCCTAATCGCGTTT
TCAACAAAAAACAACGCTCTTATAGTTGGGAGAATACCTTTATATAACTATTTTATTCTT
TATTGGCTACCAAATATGAAGATAATTAAACATGTTCCATGTTACCCCAACCTACTATAC
ATAAACGTACTAAAACTGTCTTTATGTTTAAAAAGCGAATTTGTAAATTCGCGCGAAAAT
TTAAACATCGGAGCCGTAAATCATGTGCGCGCGGTCGAGCGTAGGCTGATGCGTTTAATT
GTTTTATTCTATGACGTCACAATACGAACCGAGAACGAGGCGGGGTGCGCGTATTTTTGA
ATTGGTTAACCCTCAGTTCGATTGTTTTAGGAGTCGTCGCATTTCTTTCCAATCCATTAA
CGCTATTGTGATAAATCGTGGGTGACCGTTCGCTTTTTAAGACAAATTGCGGTTCGTGAG
CGATTGTGTCGTAATAGGTCACACATAAATTTCATCTTACACAAGCAGTGCTATAATGCG
TCATAGCGCAGATCGTAAAAATTAGCTACGTTCGTTGAAATGTCGTATAAACTTACACGA
CTACAAGCGGTACATAAACACTTTATGACATAATATCTACGACAAACTTTAAAAAATAAT
GAAGAAACGTATAGTAAATATATTCACGCCATATCTACGTATTTAGCCATTTCGCGCACT
TAAAAATAGTTGTTTGGCCACTTCACAATTTGTTATATGGCCAGTTTATTATCTGATCTG
GATCAATTATAACAAGCGCATCTTCCATCTGGATCCTGATGAACTGATACAACGCGAGCG
GCGACATACAGTCTGGACATTCACTCGTTCCCAATCAAACGCAATCCGATTTCAATCTGG
AAAACGGCAAACACGACTCATCGGTCGGCATTTAATGAATTCTGCGCTCACTGTATTTTA
GTGATTTAATATCGCCGTTTTCCAAGGACGCAGGATTAGCCCATCGTGTTAAACTAGGCG
GAATGACCCACTCGATCGCTGGATGACGATTCGAGTATTTGGACAATTATTAGGATACTT
ATCAGGCAGATTATTGAATTGATACAGTTTTCGAGAAGGGGATTTATATCTCGTTTGCAA
TATATGCATACAATGCTATATATAAGTTTTATGCGCACATATTTTCGGGTGATTTTTTGA
AAAAAATATAGTATTCAAGGAATTATAAATGTACATCTCCGCTTACGACTCCTATAGACC
GTTGTTAATTGTTTAAAACACGTTCAGGATATTTCAATATTATGTGCTAAATGTGTCCCG
TCTTCCCCCAGCCCATTATACAATAGGCGAGGGGTATGGTAGGGCCATAGCAATTTGTAA
ACTACCTTTTTTTCTCACACCCAAGTTTGTTTTATACAAGCCCAATTTAAAACGTAATAA
ATGGCGTTCGATTCGGCCACTGATGGGTAATCAAGGTCGGTTGAAAAATCAGTGTTAACC
ATATAATGGAACGCGGCCTTTTCGTTCCTTCCAGCACTAATGCGCTTTTGTGGAAAGCAG
GAGCTCGAATTATCCACAAAGGAGACAACGCATTAATCGAGTCCCGCAGTTTAACGGTAA
CGTGGGAATTTCAAATCATGGAAGCTTTCTCTGTGGTGGACACATGGAACTTTCGTTTAG
CGAACCGCAAATCGCTTGTTAATCAACCTCACCGATATTTATATTATGTTGCTGAATGCT
GTGCACGTAGAACATGCGAATCATGCTTGCACAATATAATTCGTATTTGTATACTAATAT
AGTACTGTGGGGTAAGCTGGAGACCGTAAGCAAATAAATCATAAATTTCATTTCCTGATT
CAAACAATTAACAACGCTATTAGAGTTATGGCTACGGTTAAATAACTGAAAATATTCTTT
GTTTACAACCAAATGGGACGTAAAAAGTGAATGAAAACATGTCCCATCCTACCCCACTCT
ACTATAGTTGTATAATATAAACGTACCTTTATGTGGAAGACTTTCCCTATTAAAACACAA
CGCCATGCTGCTGGCTTGCCTACAAGAATCGTACGTCGCCATTTAAAATATTTCGCCGAA
AATGTCCAGAGACAGAAAATGTAAATTTTCCTAAATCAGAAAAGTCCTTTATATATAACA
GTATATGTCTGTCATTAAAATAATGTCAGTAAGGTTTAAAATTATAAGGTAAACAATTCA
TAAAGGCATGCAAAAATTACAAAGAATATGTCTTGGTGGTAATTAATATGTTTTTTTGTA
TATTTTTTTAAAGTAGAACGGGGGAAGACGGTACACCTTTACCACATAATATCTAAACTT
TCTAGTTGTGTTTTTAAACAATTAACAACGGTGCATGGGAGTCGTAAAATACGGTTTCAT
ATTTCTTTGAATGTTCTTTGTTTACTACCAAATTGGACGAGAAAACAGATTGAAAAGGTG
TCCTATCTCCCCCCACCCTACTATATCATTTTATTTATCGTCTGCTTGTTTTAACATATT
ATCCTGTTTAATTCGACCAAGGTTTATATTTCAAACATTAACCATCTCGGTTTTCGGTAC
ATAACAAAAACAAGCGACGACAAAATAAAATTTCGAAGATATCGCGGTTTCCGAAAGCAA
ATTCAAAACACGAAAATCGAAGTCGGGACAACATAACATATGACGGAGCGATAAGAATGA
AATTTGGCGCTGACGAACACGGTAAGGCGGGGATATATTGGGCCTGTAGCCGCAGAGTGT
TAATCGTGGAACAGTTGTTTTATTTGGCCGGAACTGCGATAAACAGAATGAGTTAATATT
TGTTCTGGAGCCGCCGGTGAGCTATTTCGGTGTTGTCACTTTGCTGATACTTATATTTGC
GTGGTGTGGGCACGCGACTCTGCTGTTATCGTTAAGCGATAGCGGAAAAGCGGCCTTGGA
AATGGGTATGTTACTACATTTGTGAGCAAACAGTTTTATCAGTACGGATCGAATCTTGAA
AACAAGCCTAAAATTGGAGTCTTGTTGTCCGTGGTTTAAACCGTCGTGAAATTGAGTCTA
CACGAGCAGGTGCAACAGGCAACTACTTTCGTACATCTGTAAACTACTTCGGCGAAACTT
TTAAATAAAATTTGAATCGAAACGTGGCGCGAGACCTCGGGCTCGGAGGAGTGGTGTTCC
GTACAATGGCCGACATGGAAGGGCTTTCCGAATTGCACCAAATCGGTGCGGATTAACGCA
ACGGGATATCGGCCCGTGGACGCCCAAAGTCC
