- Region 'REG00000412'
Cis-regulatory Region
Name
Ci-Pax6 -2500/2600
Short name
n/a
Region ID
REG00000412
Status
In Process of Manual Curation
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(extended_promoter)
Author
Steven Q. Irvine (2008-06-24)
Annotator
Émilie Carmona (2008-06-24)
Curator
Delphine Dauga (2010-02-26)
At tailbud stage, this region allows expression of Ci-Pax6 in entire CNS. Ectopic expression is also detected in lineage A8.16 muscle cells.
Modification of Ci-Pax6 -2500/7000 by deletion
- Ci-Pax6 -2500/7000 REG00000404 [ no_output ]
- Ci-Pax6 -1.8kb/+1kb REG00000408 [ regulatory_region (extended_promoter) ]
- Ci-Pax6 -0.6kb/+1kb REG00000411 [ regulatory_region (extended_promoter) ]
- Ci-Pax6 -2500/2600 REG00000412 [ regulatory_region (extended_promoter) ]
- Ci-Pax6 -0.2kb/+2.6kb REG00000413 [ regulatory_region (extended_promoter) ]
- Ci-Pax6 -2500/7000 delta 2600/3700 REG00000414 [ regulatory_region (extended_promoter) ]
- Ci-Pax6 -1.8kb/+1.5kb REG00000415 [ regulatory_region (extended_promoter) ]
- Ci-Pax6 -1.8kb/+1kb 1.7kb/2kb REG00000416 [ regulatory_region (extended_promoter) ]
- Ci-Pax6 -2500/7000 delta 1000/3700 REG00000417 [ regulatory_region (extended_promoter) ]
- Ci-Pax6 -0.2kb/+1kb +3.7kb/7kb REG00000418 [ regulatory_region (extended_promoter) ]
5,699,9925,705,053
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [5,699,992 / 5,705,053] on scaffold KhC9
Sequence from JGI Version 1 thanks to coordinates in the paper.
Show sequence
Length: 5,062
GCGAAACAAAAATGTTTTTTAAATCAGAATAAGTGGTAACGTGTTTTAAATAGGTGTGTA
CATAGTATTAGCCCGTGAATATTAGAATTAAAACTGAATCATTTAAATAATCGAGGTAAA
CTAGTTAACCTAATGTTTCAATAAAGTTTATGTGTATATATAGTAGATACACCAACGTAA
CAAAACTTTGCTTTTATATATTAGGTTATACAATATTTCTCATATCATTTAAGGTTACAA
AGCGCATTGATTTTCGCACAGAACTTAACCGTAAACAATAAACATACGCGTCGCAAGGAA
ATATAGATTAGGAGTCTTACAGCGTGTTTGGCATATTCCCTTCCCTTACCTAAGACGTTG
AATTGCGCGTCGTTTATTCCCAATAGCCCGCTCGCGCTTGCTTTTAAAGTACAGACATAC
AGTAACAAAAGGGGGATTAGTGATGTTTTAGTGTGTTACTCTAAAGGAAAATGTCACGGT
TTGACCTGGCTTGTCCAAATTCGTACCAGGTTTTATGAAATATACATAAGAGTTAGTATA
ACGATATAAGGGGTAAAATAGGACACTGTGAGCTCATAATATCCCATATTTCCTAATCGC
GTTTTCAACAAAAAACAACGCTCTTATAGTTGGGAGAATACCTTTATATAACTATTTTAT
TCTTTATTGGCTACCAAATATGAAGATAATTAAACATGTTCCATGTTACCCCAACCTACT
ATACATAAACGTACTAAAACTGTCTTTATGTTTAAAAAGCGAATTTGTAAATTCGCGCGA
AAATTTAAACATCGGAGCCGTAAATCATGTGCGCGCGGTCGAGCGTAGGCTGATGCGTTT
AATTGTTTTATTCTATGACGTCACAATACGAACCGAGAACGAGGCGGGGTGCGCGTATTT
TTGAATTGGTTAACCCTCAGTTCGATTGTTTTAGGAGTCGTCGCATTTCTTTCCAATCCA
TTAACGCTATTGTGATAAATCGTGGGTGACCGTTCGCTTTTTAAGACAAATTGCGGTTCG
TGAGCGATTGTGTCGTAATAGGTCACACATAAATTTCATCTTACACAAGCAGTGCTATAA
TGCGTCATAGCGCAGATCGTAAAAATTAGCTACGTTCGTTGAAATGTCGTATAAACTTAC
ACGACTACAAGCGGTACATAAACACTTTATGACATAATATCTACGACAAACTTTAAAAAA
TAATGAAGAAACGTATAGTAAATATATTCACGCCATATCTACGTATTTAGCCATTTCGCG
CACTTAAAAATAGTTGTTTGGCCACTTCACAATTTGTTATATGGCCAGTTTATTATCTGA
TCTGGATCAATTATAACAAGCGCATCTTCCATCTGGATCCTGATGAACTGATACAACGCG
AGCGGCGACATACAGTCTGGACATTCACTCGTTCCCAATCAAACGCAATCCGATTTCAAT
CTGGAAAACGGCAAACACGACTCATCGGTCGGCATTTAATGAATTCTGCGCTCACTGTAT
TTTAGTGATTTAATATCGCCGTTTTCCAAGGACGCAGGATTAGCCCATCGTGTTAAACTA
GGCGGAATGACCCACTCGATCGCTGGATGACGATTCGAGTATTTGGACAATTATTAGGAT
ACTTATCAGGCAGATTATTGAATTGATACAGTTTTCGAGAAGGGGATTTATATCTCGTTT
GCAATATATGCATACAATGCTATATATAAGTTTTATGCGCACATATTTTCGGGTGATTTT
TTGAAAAAAATATAGTATTCAAGGAATTATAAATGTACATCTCCGCTTACGACTCCTATA
GACCGTTGTTAATTGTTTAAAACACGTTCAGGATATTTCAATATTATGTGCTAAATGTGT
CCCGTCTTCCCCCAGCCCATTATACAATAGGCGAGGGGTATGGTAGGGCCATAGCAATTT
GTAAACTACCTTTTTTTCTCACACCCAAGTTTGTTTTATACAAGCCCAATTTAAAACGTA
ATAAATGGCGTTCGATTCGGCCACTGATGGGTAATCAAGGTCGGTTGAAAAATCAGTGTT
AACCATATAATGGAACGCGGCCTTTTCGTTCCTTCCAGCACTAATGCGCTTTTGTGGAAA
GCAGGAGCTCGAATTATCCACAAAGGAGACAACGCATTAATCGAGTCCCGCAGTTTAACG
GTAACGTGGGAATTTCAAATCATGGAAGCTTTCTCTGTGGTGGACACATGGAACTTTCGT
TTAGCGAACCGCAAATCGCTTGTTAATCAACCTCACCGATATTTATATTATGTTGCTGAA
TGCTGTGCACGTAGAACATGCGAATCATGCTTGCACAATATAATTCGTATTTGTATACTA
ATATAGTACTGTGGGGTAAGCTGGAGACCGTAAGCAAATAAATCATAAATTTCATTTCCT
GATTCAAACAATTAACAACGCTATTAGAGTTATGGCTACGGTTAAATAACTGAAAATATT
CTTTGTTTACAACCAAATGGGACGTAAAAAGTGAATGAAAACATGTCCCATCCTACCCCA
CTCTACTATAGTTGTATAATATAAACGTACCTTTATGTGGAAGACTTTCCCTATTAAAAC
ACAACGCCATGCTGCTGGCTTGCCTACAAGAATCGTACGTCGCCATTTAAAATATTTCGC
CGAAAATGTCCAGAGACAGAAAATGTAAATTTTCCTAAATCAGAAAAGTCCTTTATATAT
AACAGTATATGTCTGTCATTAAAATAATGTCAGTAAGGTTTAAAATTATAAGGTAAACAA
TTCATAAAGGCATGCAAAAATTACAAAGAATATGTCTTGGTGGTAATTAATATGTTTTTT
TGTATATTTTTTTAAAGTAGAACGGGGGAAGACGGTACACCTTTACCACATAATATCTAA
ACTTTCTAGTTGTGTTTTTAAACAATTAACAACGGTGCATGGGAGTCGTAAAATACGGTT
TCATATTTCTTTGAATGTTCTTTGTTTACTACCAAATTGGACGAGAAAACAGATTGAAAA
GGTGTCCTATCTCCCCCCACCCTACTATATCATTTTATTTATCGTCTGCTTGTTTTAACA
TATTATCCTGTTTAATTCGACCAAGGTTTATATTTCAAACATTAACCATCTCGGTTTTCG
GTACATAACAAAAACAAGCGACGACAAAATAAAATTTCGAAGATATCGCGGTTTCCGAAA
GCAAATTCAAAACACGAAAATCGAAGTCGGGACAACATAACATATGACGGAGCGATAAGA
ATGAAATTTGGCGCTGACGAACACGGTAAGGCGGGGATATATTGGGCCTGTAGCCGCAGA
GTGTTAATCGTGGAACAGTTGTTTTATTTGGCCGGAACTGCGATAAACAGAATGAGTTAA
TATTTGTTCTGGAGCCGCCGGTGAGCTATTTCGGTGTTGTCACTTTGCTGATACTTATAT
TTGCGTGGTGTGGGCACGCGACTCTGCTGTTATCGTTAAGCGATAGCGGAAAAGCGGCCT
TGGAAATGGGTATGTTACTACATTTGTGAGCAAACAGTTTTATCAGTACGGATCGAATCT
TGAAAACAAGCCTAAAATTGGAGTCTTGTTGTCCGTGGTTTAAACCGTCGTGAAATTGAG
TCTACACGAGCAGGTGCAACAGGCAACTACTTTCGTACATCTGTAAACTACTTCGGCGAA
ACTTTTAAATAAAATTTGAATCGAAACGTGGCGCGAGACCTCGGGCTCGGAGGAGTGGTG
TTCCGTACAATGGCCGACATGGAAGGGCTTTCCGAATTGCACCAAATCGGTGCGGATTAA
CGCAACGGGATATCGGCCCGTGGACGCCCAAAGTCCCACCGAAATTAATAAGCTAATCCG
AAGCAGGTTTCGGAATCGTAACGCAGTAGTGTTATAGGAACCGTTAGAAAAAAAACTACT
TTTGATTTATAAAAACATTCGCACCATTTTTAAAGCTAGCAATATTTAAAAAAATTAAAA
ACGAATTACGATTTTTTGGGGGTATAGTTGTAAGTTATTATGGTTTTGAAAAAAGTTTCG
CTTTATAACAGCGATTATATAATGCCGAAACTGCAATGCGTTCGCTGTGCGCGCTAGTCG
CCATTTTGATGAATTTCCATCGAGTCAATATTATGCACGGGAAAAATATTTATACTTATC
AAATATAAAGTATAGATGTGAAATACAGGTTAATTGTTTCTTATATAAAATAACCGCCCA
TATTAATATGTTTATAAATTTAAGTTTTAAACAAAATAAAAAAAACGTTGTTATTTATGT
CATAATTTCTATTTTCAGTCACGAAAACATTTTTCCTCACGAATCAATTTTCTGTCTACT
TTACTTTTCCTTTCTGCAACTTTTTGCTTCTATTTTCAGTCCTTTGACAAAAATCGCTCA
AAAACTCTTCAGTATAGACTTAAATTTTCCTGAATATTTTGCTGGAGTAATTTGGATGAC
GACGGCTCCCAAAATCCAAGAAATGTTTCGTCGATGCTACTATATACGTAATCGGGGAAT
CCCCCCGCTTTTTTCCTTTTCTCGGCCATCGTGGGAACAAGGTTCGGTGGCCATTGTTGT
TGCTCGGTGTAGATCAGTGTTCCCGGAGAAAAAGTGACGGACCGTAGAGAAAAGTAACGG
CCCAGTTTGATAGAGCAACAAGCATTAAGTCCCAAGAGAGGAACTGTGGTATATTTAGAT
CACTAGATTTACTTGCATTGAGAAAGCAAGACACTTAAACGCATATTCCTTGATGGTGTA
TATGGCATACCAAAGTAGAAAATACGGTACAACTCGAAAAAAAACTATGTTTAATATTCG
GTTACGTTGCAGTATAATTTCAAGGTTTAAATTCTTTCCAGAGACACGCGTAATTTACAT
ATAAAGAGGCGTATATATATATTACATACGATGCGCTTATATACACAAATCTGTATATAG
AGAGGGCGTATAAACAAAATCAGGATTTTAAATATTTTTACATGGCATCACTGCTCTAAA
GAATCGGTTAACAATACCTGAATAGGGAGCCCGTAATGTATTGATTAAGACCCCGAAACA
AAGCGGAGAATTAGTATTAAAA
