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CIS-REGULATION

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  1. Region 'REG00000411'

Cis-regulatory Region

Name

Ci-Pax6 -0.6kb/+1kb

Short name

n/a

Region ID

REG00000411

Status

Not Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Steven Q. Irvine (2008-06-18)

Annotator

Émilie Carmona (2008-06-24)

Curator

Émilie Carmona (2008-06-18)

View position in WashU

Description

At tailbud stage, this region allows no expression of Ci-Pax6.

Hierarchy of Regulatory Regions

Modification of Ci-Pax6 -2500/7000 by deletion

Regulated gene(s)

KH2012:KH.C9.68 (PAX3; PAX4; PAX6)

Construct(s) made to test this region

CONS00000392: Pax6 -600pb/1pb ::LacZ

Show in situ data
Overview of functional TF binding sites in this region

5,701,8285,702,428

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [5,701,828 / 5,702,428] on scaffold KhC9

Show sequence

Length: 601

TTTAAAATATTTCGCCGAAAATGTCCAGAGACAGAAAATGTAAATTTTCCTAAATCAGAA
AAGTCCTTTATATATAACAGTATATGTCTGTCATTAAAATAATGTCAGTAAGGTTTAAAA
TTATAAGGTAAACAATTCATAAAGGCATGCAAAAATTACAAAGAATATGTCTTGGTGGTA
ATTAATATGTTTTTTTGTATATTTTTTTAAAGTAGAACGGGGGAAGACGGTACACCTTTA
CCACATAATATCTAAACTTTCTAGTTGTGTTTTTAAACAATTAACAACGGTGCATGGGAG
TCGTAAAATACGGTTTCATATTTCTTTGAATGTTCTTTGTTTACTACCAAATTGGACGAG
AAAACAGATTGAAAAGGTGTCCTATCTCCCCCCACCCTACTATATCATTTTATTTATCGT
CTGCTTGTTTTAACATATTATCCTGTTTAATTCGACCAAGGTTTATATTTCAAACATTAA
CCATCTCGGTTTTCGGTACATAACAAAAACAAGCGACGACAAAATAAAATTTCGAAGATA
TCGCGGTTTCCGAAAGCAAATTCAAAACACGAAAATCGAAGTCGGGACAACATAACATAT
G

Reference(s)

Irvine et al. (2008). Cis-regulatory organization of the Pax6 gene in the ascidian Ciona intestinalis. Dev. Biol. 317(2):649-59

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