- Region 'REG00000410'
Cis-regulatory Region
Name
Ci-Pax6 -2500/1 delta -2200/-700
Short name
n/a
Region ID
REG00000410
Status
In Process of Manual Curation
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
no_output
Author
Steven Q. Irvine (2008-06-18)
Annotator
Émilie Carmona (2008-06-18)
Curator
Delphine Dauga (2010-02-26)
This region allows expression of Ci-Pax6 in trunk mesenchyme at late stage.
Modification of Ci-Pax6 -2436/1 by deletion
- Ci-Pax6 -2500/7000 REG00000404 [ no_output ]
- Ci-Pax6 -1.8kb/+1kb REG00000408 [ regulatory_region (extended_promoter) ]
- Ci-Pax6 -0.6kb/+1kb REG00000411 [ regulatory_region (extended_promoter) ]
- Ci-Pax6 -2500/2600 REG00000412 [ regulatory_region (extended_promoter) ]
- Ci-Pax6 -0.2kb/+2.6kb REG00000413 [ regulatory_region (extended_promoter) ]
- Ci-Pax6 -2500/7000 delta 2600/3700 REG00000414 [ regulatory_region (extended_promoter) ]
- Ci-Pax6 -1.8kb/+1.5kb REG00000415 [ regulatory_region (extended_promoter) ]
- Ci-Pax6 -1.8kb/+1kb 1.7kb/2kb REG00000416 [ regulatory_region (extended_promoter) ]
- Ci-Pax6 -2500/7000 delta 1000/3700 REG00000417 [ regulatory_region (extended_promoter) ]
- Ci-Pax6 -0.2kb/+1kb +3.7kb/7kb REG00000418 [ regulatory_region (extended_promoter) ]
5,699,9925,702,428
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [5,699,992 / 5,702,428] on scaffold KhC9
Sequence from JGI Version 1 thanks to coordinates in the paper. Nucleotides deleted was replaced by "-".
Show sequence
Length: 2,436
TTTAAAATATTTCGCCGAAAATGTCCAGAGACAGAAAATGTAAATTTTCCTAAATCAGAA
AAGTCCTTTATATATAACAGTATATGTCTGTCATTAAAATAATGTCAGTAAGGTTTAAAA
TTATAAGGTAAACAATTCATAAAGGCATGCAAAAATTACAAAGAATATGTCTTGGTGGTA
ATTAATATGTTTTTTTGTATATTTTTTTAAAGTAGAACGGGGGAAGACGGTACACCTTTA
CCACATAATATCTAAACTTTCTAGTTGTGTTTTTAAACAATTAACAACGGTGCATGGGAG
TCGTAAAATACGGTTTCATATTTCTTTGAATGTTCTTTGTTTACTACCAAATTGGACGAG
AAAACAGATTGAAAAGGTGTCCTATCTCCCCCCACCCTACTATATCATTTTATTTATCGT
CTGCTTGTTTTAACATATTATCCTGTTTAATTCGACCAAGGTTTATATTTCAAACATTAA
CCATCTCGGTTTTCGGTACATAACAAAAACAAGCGACGACAAAATAAAATTTCGAAGATA
TCGCGGTTTCCGAAAGCAAATTCAAAACACGAAAATCGAAGTCGGGACAACATAACATAT
G-----------------------------------------------------------
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----AAAGTAACGGCCCAGTTTGATAGAGCAACAAGCATTAAGTCCCAAGAGAGGAACTG
TGGTATATTTAGATCACTAGATTTACTTGCATTGAGAAAGCAAGACACTTAAACGCATAT
TCCTTGATGGTGTATATGGCATACCAAAGTAGAAAATACGGTACAACTCGAAAAAAAACT
ATGTTTAATATTCGGTTACGTTGCAGTATAATTTCAAGGTTTAAATTCTTTCCAGAGACA
CGCGTAATTTACATATAAAGAGGCGTATATATATATTACATACGATGCGCTTATATACAC
AAATCTGTATATAGAGAGGGCGTATAAACAAAATCAGGATTTTAAATATTTTTACATGGC
ATCACTGCTCTAAAGAATCGGTTAACAATACCTGAATAGGGAGCCCGTAATGTATTGATT
AAGACCCCGAAACAAAGCGGAGAATTAGTATTAAAA
