- Region 'REG00000409'
Cis-regulatory Region
Name
Ci-Pax6 -1800/1 delta -2200/-1700
Short name
n/a
Region ID
REG00000409
Status
In Process of Manual Curation
Origin
engineered region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(extended_promoter)
Author
Steven Q. Irvine (2008-06-18)
Annotator
Émilie Carmona (2008-06-18)
Curator
Delphine Dauga (2010-02-26)
At tailbud stage, this region allows sporadic expression of Ci-Pax6 in the CNS.
Modification of Ci-Pax6 -2436/1 by deletion
- Ci-Pax6 -2500/7000 REG00000404 [ no_output ]
- Ci-Pax6 -1.8kb/+1kb REG00000408 [ regulatory_region (extended_promoter) ]
- Ci-Pax6 -0.6kb/+1kb REG00000411 [ regulatory_region (extended_promoter) ]
- Ci-Pax6 -2500/2600 REG00000412 [ regulatory_region (extended_promoter) ]
- Ci-Pax6 -0.2kb/+2.6kb REG00000413 [ regulatory_region (extended_promoter) ]
- Ci-Pax6 -2500/7000 delta 2600/3700 REG00000414 [ regulatory_region (extended_promoter) ]
- Ci-Pax6 -1.8kb/+1.5kb REG00000415 [ regulatory_region (extended_promoter) ]
- Ci-Pax6 -1.8kb/+1kb 1.7kb/2kb REG00000416 [ regulatory_region (extended_promoter) ]
- Ci-Pax6 -2500/7000 delta 1000/3700 REG00000417 [ regulatory_region (extended_promoter) ]
- Ci-Pax6 -0.2kb/+1kb +3.7kb/7kb REG00000418 [ regulatory_region (extended_promoter) ]
5,699,9925,702,428
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [5,699,992 / 5,702,428] on scaffold KhC9
Show sequence
Length: 2,437
TTTAAAATATTTCGCCGAAAATGTCCAGAGACAGAAAATGTAAATTTTCCTAAATCAGAA
AAGTCCTTTATATATAACAGTATATGTCTGTCATTAAAATAATGTCAGTAAGGTTTAAAA
TTATAAGGTAAACAATTCATAAAGGCATGCAAAAATTACAAAGAATATGTCTTGGTGGTA
ATTAATATGTTTTTTTGTATATTTTTTTAAAGTAGAACGGGGGAAGACGGTACACCTTTA
CCACATAATATCTAAACTTTCTAGTTGTGTTTTTAAACAATTAACAACGGTGCATGGGAG
TCGTAAAATACGGTTTCATATTTCTTTGAATGTTCTTTGTTTACTACCAAATTGGACGAG
AAAACAGATTGAAAAGGTGTCCTATCTCCCCCCACCCTACTATATCATTTTATTTATCGT
CTGCTTGTTTTAACATATTATCCTGTTTAATTCGACCAAGGTTTATATTTCAAACATTAA
CCATCTCGGTTTTCGGTACATAACAAAAACAAGCGACGACAAAATAAAATTTCGAAGATA
TCGCGGTTTCCGAAAGCAAATTCAAAACACGAAAATCGAAGTCGGGACAACATAACATAT
GACGGAGCGATAAGAATGAAATTTGGCGCTGACGAACACGGTAAGGCGGGGATATATTGG
GCCTGTAGCCGCAGAGTGTTAATCGTGGAACAGTTGTTTTATTTGGCCGGAACTGCGATA
AACAGAATGAGTTAATATTTGTTCTGGAGCCGCCGGTGAGCTATTTCGGTGTTGTCACTT
TGCTGATACTTATATTTGCGTGGTGTGGGCACGCGACTCTGCTGTTATCGTTAAGCGATA
GCGGAAAAGCGGCCTTGGAAATGGGTATGTTACTACATTTGTGAGCAAACAGTTTTATCA
GTACGGATCGAATCTTGAAAACAAGCCTAAAATTGGAGTCTTGTTGTCCGTGGTTTAAAC
CGTCGTGAAATTGAGTCTACACGAGCAGGTGCAACAGGCAACTACTTTCGTACATCTGTA
AACTACTTCGGCGAAACTTTTAAATAAAATTTGAATCGAAACGTGGCGCGAGACCTCGGG
CTCGGAGGAGTGGTGTTCCGTACAATGGCCGACATGGAAGGGCTTTCCGAATTGCACCAA
ATCGGTGCGGATTAACGCAACGGGATATCGGCCCGTGGACGCCCAAAGTCCCACCGAAAT
TAATAAGCTAATCCGAAGCAGGTTTCGGAATCGTAACGCAGTAGTGTTATAGGAACCGTT
AGAAAAAAAACTACTTTTGATTTATAAAAACATTCGCACCATTTTTAAAGCTAGCAATAT
TTAAAAAAATTAAAAACGAATTACGATTTTTTGGGGGTATAGTTGTAAGTTATTATGGTT
TTGAAAAAAGTTTCGCTTTATAACAGCGATTATATAATGCCGAAACTGCAATGCGTTCGC
TGTGCGCGCTAGTCGCCATTTTGATGAATTTCCATCGAGTCAATATTATGCACGGGAAAA
ATATTTATACTTATCAAATATAAAGTATAGATGTGAAATACAGGTTAATTGTTTCTTATA
TAAAATAACCGCCCATATTAATATGTTTATAAATTTAAGTTTTAAACAAAATAAAAAAAA
CGTTGTTATTTATGTCATAATTTCTATTTTCAGTCACGAAAACATTTTTCCTCACGAATC
AATTTTCTGTCTACTTTACTTTTCCTTTCTGCAACTTTTTGCTTCTATTTTCAGTCCTTT
GACAAAAATCGCTCAAAAACTCTTCAGTATAGAC--------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-----AAAGTAACGGCCCAGTTTGATAGAGCAACAAGCATTAAGTCCCAAGAGAGGAACT
GTGGTATATTTAGATCACTAGATTTACTTGCATTGAGAAAGCAAGACACTTAAACGCATA
TTCCTTGATGGTGTATATGGCATACCAAAGTAGAAAATACGGTACAACTCGAAAAAAAAC
TATGTTTAATATTCGGTTACGTTGCAGTATAATTTCAAGGTTTAAATTCTTTCCAGAGAC
ACGCGTAATTTACATATAAAGAGGCGTATATATATATTACATACGATGCGCTTATATACA
CAAATCTGTATATAGAGAGGGCGTATAAACAAAATCAGGATTTTAAATATTTTTACATGG
CATCACTGCTCTAAAGAATCGGTTAACAATACCTGAATAGGGAGCCCGTAATGTATTGAT
TAAGACCCCGAAACAAAGCGGAGAATTAGTATTAAAA
