Login
Help

CIS-REGULATION

Submit your Data

  1. Region 'REG00000405'

Cis-regulatory Region

Name

Ci-Pax6 -2436/1

Short name

n/a

Region ID

REG00000405

Status

In Process of Manual Curation

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Steven Q. Irvine (2008-06-15)

Annotator

Émilie Carmona (2008-06-17)

Curator

Delphine Dauga (2010-02-26)

View position in WashU

Description

At tailbud stage, this region is able to drive expression in the entire CNS.

Hierarchy of Regulatory Regions

Modification of Ci-Pax6 -2500/2600 by deletion

Regulated gene(s)

KH2012:KH.C9.68 (PAX3; PAX4; PAX6)

Construct(s) made to test this region

CONS00000387: Pax6 -2436pb/1pb::LacZ

Show in situ data
Overview of functional TF binding sites in this region

5,699,9925,702,428

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [5,699,992 / 5,702,428] on scaffold KhC9

Show sequence

Length: 2,437

TTTAAAATATTTCGCCGAAAATGTCCAGAGACAGAAAATGTAAATTTTCCTAAATCAGAA
AAGTCCTTTATATATAACAGTATATGTCTGTCATTAAAATAATGTCAGTAAGGTTTAAAA
TTATAAGGTAAACAATTCATAAAGGCATGCAAAAATTACAAAGAATATGTCTTGGTGGTA
ATTAATATGTTTTTTTGTATATTTTTTTAAAGTAGAACGGGGGAAGACGGTACACCTTTA
CCACATAATATCTAAACTTTCTAGTTGTGTTTTTAAACAATTAACAACGGTGCATGGGAG
TCGTAAAATACGGTTTCATATTTCTTTGAATGTTCTTTGTTTACTACCAAATTGGACGAG
AAAACAGATTGAAAAGGTGTCCTATCTCCCCCCACCCTACTATATCATTTTATTTATCGT
CTGCTTGTTTTAACATATTATCCTGTTTAATTCGACCAAGGTTTATATTTCAAACATTAA
CCATCTCGGTTTTCGGTACATAACAAAAACAAGCGACGACAAAATAAAATTTCGAAGATA
TCGCGGTTTCCGAAAGCAAATTCAAAACACGAAAATCGAAGTCGGGACAACATAACATAT
GACGGAGCGATAAGAATGAAATTTGGCGCTGACGAACACGGTAAGGCGGGGATATATTGG
GCCTGTAGCCGCAGAGTGTTAATCGTGGAACAGTTGTTTTATTTGGCCGGAACTGCGATA
AACAGAATGAGTTAATATTTGTTCTGGAGCCGCCGGTGAGCTATTTCGGTGTTGTCACTT
TGCTGATACTTATATTTGCGTGGTGTGGGCACGCGACTCTGCTGTTATCGTTAAGCGATA
GCGGAAAAGCGGCCTTGGAAATGGGTATGTTACTACATTTGTGAGCAAACAGTTTTATCA
GTACGGATCGAATCTTGAAAACAAGCCTAAAATTGGAGTCTTGTTGTCCGTGGTTTAAAC
CGTCGTGAAATTGAGTCTACACGAGCAGGTGCAACAGGCAACTACTTTCGTACATCTGTA
AACTACTTCGGCGAAACTTTTAAATAAAATTTGAATCGAAACGTGGCGCGAGACCTCGGG
CTCGGAGGAGTGGTGTTCCGTACAATGGCCGACATGGAAGGGCTTTCCGAATTGCACCAA
ATCGGTGCGGATTAACGCAACGGGATATCGGCCCGTGGACGCCCAAAGTCCCACCGAAAT
TAATAAGCTAATCCGAAGCAGGTTTCGGAATCGTAACGCAGTAGTGTTATAGGAACCGTT
AGAAAAAAAACTACTTTTGATTTATAAAAACATTCGCACCATTTTTAAAGCTAGCAATAT
TTAAAAAAATTAAAAACGAATTACGATTTTTTGGGGGTATAGTTGTAAGTTATTATGGTT
TTGAAAAAAGTTTCGCTTTATAACAGCGATTATATAATGCCGAAACTGCAATGCGTTCGC
TGTGCGCGCTAGTCGCCATTTTGATGAATTTCCATCGAGTCAATATTATGCACGGGAAAA
ATATTTATACTTATCAAATATAAAGTATAGATGTGAAATACAGGTTAATTGTTTCTTATA
TAAAATAACCGCCCATATTAATATGTTTATAAATTTAAGTTTTAAACAAAATAAAAAAAA
CGTTGTTATTTATGTCATAATTTCTATTTTCAGTCACGAAAACATTTTTCCTCACGAATC
AATTTTCTGTCTACTTTACTTTTCCTTTCTGCAACTTTTTGCTTCTATTTTCAGTCCTTT
GACAAAAATCGCTCAAAAACTCTTCAGTATAGACTTAAATTTTCCTGAATATTTTGCTGG
AGTAATTTGGATGACGACGGCTCCCAAAATCCAAGAAATGTTTCGTCGATGCTACTATAT
ACGTAATCGGGGAATCCCCCCGCTTTTTTCCTTTTCTCGGCCATCGTGGGAACAAGGTTC
GGTGGCCATTGTTGTTGCTCGGTGTAGATCAGTGTTCCCGGAGAAAAAGTGACGGACCGT
AGAGAAAAGTAACGGCCCAGTTTGATAGAGCAACAAGCATTAAGTCCCAAGAGAGGAACT
GTGGTATATTTAGATCACTAGATTTACTTGCATTGAGAAAGCAAGACACTTAAACGCATA
TTCCTTGATGGTGTATATGGCATACCAAAGTAGAAAATACGGTACAACTCGAAAAAAAAC
TATGTTTAATATTCGGTTACGTTGCAGTATAATTTCAAGGTTTAAATTCTTTCCAGAGAC
ACGCGTAATTTACATATAAAGAGGCGTATATATATATTACATACGATGCGCTTATATACA
CAAATCTGTATATAGAGAGGGCGTATAAACAAAATCAGGATTTTAAATATTTTTACATGG
CATCACTGCTCTAAAGAATCGGTTAACAATACCTGAATAGGGAGCCCGTAATGTATTGAT
TAAGACCCCGAAACAAAGCGGAGAATTAGTATTAAAA

Reference(s)

Irvine et al. (2008). Cis-regulatory organization of the Pax6 gene in the ascidian Ciona intestinalis. Dev. Biol. 317(2):649-59

Back to Top