- Region 'REG00000395'
Cis-regulatory Region
Name
Ci-FoxD -3000/1
Short name
n/a
Region ID
REG00000395
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(extended_promoter)
Author
Mita Kaoru (2008-03-29)
Annotator
Émilie Carmona (2008-03-29)
Curator
Delphine Dauga (2010-02-24)
This region is a 3-kb genomic DNA fragment that contains a promoter region of KYOTOGRAIL2005.3.81.1, including putative transcription and translation initiation sites. This region contains 2 binding sites for a transcription factor Tcf.
2,632,5952,635,292
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment | |
|---|---|---|---|---|---|
| 1 | TCF/LEF | n/a | gtttga | [2,634,172 / 2,634,177] | |
| 2 | TCF/LEF | n/a | ctttaa | [2,634,277 / 2,634,282] |
Aniseed Coordinates: [2,632,595 / 2,635,292] on scaffold KhC8
This sequence was based on JGI V1.0.
Show sequence
Length: 3,002
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNTTACTGTACACATAATATCCAATATTTCCTAATCACATTTTTAAGTAATTTACAAC
GCCATTTTAGACTTGTAAGAATACGGTTATATAATTCCTTAATATATAGTAGGGCTGGGG
CAGATTGGACACCTCTTCACTCTATTTTCTTGCTCCATTTGGTAGTAAACAAAAAAATTC
AAATATGTTTATCACAACTCTCATAGACTGTTGTTAATTGATGAAAATAAGTTTAGGATA
TTTGGATATTGTGGGCTAAAGTTGTCCCGTCTTTCTCACCCTATACTATACACCAACGGC
CCACCCTTAAACCAAGGTGTCAAAACGGTAGTAAGGTGTCGTATATAAACTCCATACGTA
CACCCTAAAAGTGTTACAAGTCCCACTTGGTGAGTTCAAATGTCGGTCAATATTTTTAAA
TCACACAACAGATAATTTATCTGTGCTGTTGCAGCTCAGTATTAAGAATTGTGTCATGCA
AGTTGTAAGAATGACAAACCAACCTTTCATAATGTTTACTTCATCACACCGATGATAAAC
TTGTTGACAACCGAAACAAGATGAGACGAGACCGACATTACTTGATGTTAATTATTATCT
TTCATCTTTGATCAACTTTGACGGCCAAGATTAGCTCGTTAAGTCTCTCCTTGGTTTGAA
CCGTAATATAGAATAGCGTTTTGATTACATAAGCACACGTCAAAGTGATAATGTTGACAC
TTTGAATTAAAATATAAAATAATAAAGCGCGCTCTATATACAAGTTTAAATATATCAAAT
AATTATATGCATGTCAGCAGTATAAAATCCCAACTTTAGTATAAGCATAAAAAGTATGAA
TATACATTAAGTGTTTTATGTATAAAAATACGCCCATTTTATAACTGGTCAGTGAGCATA
AGGGTTTTTTTACGTGTGTATCTATAAAAAGTTGTAACCTGACTTTGAGTGGGAGTATGT
TCTTACTTTGTTTATGTTAATTAAAATTATAATTTATCAAAGATGTTAGTTCGACTTTAA
TCGTAGCTTATAGTTTGATTGATGTCGCGTGCGATTAAGCGATAAGAAGGCGAGAAATAT
CATCGATGTTTGTTCCCGATATTTGGCGGCGTTTGTGGCGTTTGAAAGAGGCGAGTTCGA
GTCGCGAGTCTCGATCTTTTCATCTTTATCTCGGTTGAAAAGATTTGTCGTGAATAAATT
GGGAAGTTGGGTCGATTGGAACACCAGTTGCAAGAATGAGTTGAACAGTTCAAATGTCCA
ATTCAAACGTTACTTGCAGTAAAACTTGTGTGGACAAGTTACAACTTAATACGAGCTGTA
TATAAAGTCGTTAGAATTTTACGAATCAGTTGACAAATATAAGGGCAGATGAAGTTATGG
TATGTATTGCGACAAACAGGCGCTGTGTGTTCAGTTTTGGTAGCAATTTACAGTTATGTA
GAAGTACTACCTGTAACATTACACAAAATACCTAAAAAGCTGAAAAACTGCAGTATTTAT
AATATGTTTTCTCGCCCTTAACTATATGAATTTTAAATACGAAAGTGCATATGAGAAACT
TGTAGACCAAGAAAGCATATCAGTTATTAAAGAGAGAGAGAGAGAGAGAGTCTTATTCAC
TTACCAGGCCAGATACGTTGTTGTTTTGACTGTATAACCGAAATTTTTCTTCAATGAGTA
ACGCAGGATATTATGGTGTCAAGTTGTGTATAGTTGTTACGAAATGGGATGCACAGACGA
GTGAAAGTATTTGGAAGGATATTTAGTGAAATAACAACAGCACGCAGTCCTGTAGTCAAG
TGGAAAAAACAACTTTGTTTTTTACCAAGTTCGTCGTAGCTTGCTATAGTAGAACTAGAG
CAAGACAGCAATGGAAACTGAGAAAGGTTGTAACTTATTTCTGAATTATTTAGAATGGGA
TTTCAGGATGAAATGCAGCGTAAAATGAAACGTGTAGATCTACATTAAGGTATTATGTGT
TTAAACAGTGAATAAGGTTATAGAATGTTTTGTACAAAAAACAGTTATTAAGTAGTGAGT
AGTTTGCGAGGATTATAGATACAGAATTTGTAAGCACATATTACAGTTTGATACTAGGTA
CAAGCTTGTTACTAATAATATACCTCTTTCATGACGTAGTCAGCATGACGTCATAAGGAA
ATACTAATCCGGCAATTGTTTGAATGGCGATATTGGATAAATTGATTTTCAAAGCAAACT
TACTTTGTTTAGATCTGTTTGCTTATAATTGATAAACAATTGATCTGTTGCTGATCAACG
GAATTATAAACGAGATCTAGGATTCGAAGAAAAAAGCGGTTGCTGGGAGAATTGAAGAAG
TGGATTTGAATAAATTGTCGCGTTTTGCAAAGTGCTCGTTCATATTTCAGCATCGAATCC
GTTGTGTGATGATGACAGTGCAGTGTTGTGTGCAATACAATACAAGCGAGGATAAGAGTG
ATCATAAACGTTTCATGATGAATCGTATTGAATCTCACGGAGCATCACGAGATAATGTCA
TCGGTTCAATCTACCCTCAACAACAAGCAGACGCCATTTTGCAAAACTGGAAATCATCGG
CGGCAGGCCCGACTCGAAACAAACATCGTGACGGGGAATCAAGGTCGCCGGTCCCGGGCA
AACCTTATCAACCACCCAATGCCACTAAGTCACTAAATGAGATGTCAGCCATAGAATGCA
TG
