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CIS-REGULATION

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  1. Region 'REG00000383'

Cis-regulatory Region

Name

Ci-fog -290/1 otx a-element added

Short name

n/a

Region ID

REG00000383

Status

Curated

Origin

engineered region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Ute Rothbächer (2008-03-09)

Annotator

Clara Degos (2010-07-22)

Curator

Delphine Dauga (2010-02-24)

View position in WashU

Description

Hierarchy of Regulatory Regions

Modification of Ci-fog -290/1 by insertion

Regulated gene(s)
n/a
Construct(s) made to test this region

CONS00000370: pfog -290/1 otx a-element added::NLS-lacZ

Show in situ data
Overview of functional TF binding sites in this region

1,827,5031,827,792

Motif Name Binding Factor(s) Sequence Position in Region Comment
1 ZnF_(GATA) n/a TTATCT [-53 / -48]
2 Ets n/a CGGAAG [-43 / -38]
3 Ets n/a AGGAAA [-28 / -23]
4 ZnF_(GATA) n/a ATATCT [-15 / -10]
5 ZnF_(GATA) n/a AGATAG [-8 / -3]

Sequence

Aniseed Coordinates: [1,827,503 / 1,827,792] on scaffold KhC10

This sequence was based on JGI Version 1.0. The otx neural a-element was inserted upstream of pfog.

Show sequence

Length: 345


CATTATGTGTGTTATTTTTGTATAGACCTGAAACAAAAATACTTTCTTGGAAAAGCTGTT
GTTGGCCAACTATTTAAATGAACTTACTGTGACCACCTGCCTTGTCAGCTGAGATTAATG
TCTCTCTACTTTAGAGTTTTAATTTAAACTGCCTTCTTCTCTTGTCAATATAATATCAAG
TTTGCATGATTGACAATGGGTCGGTACAATACACGAAGCTTATTCACTATCAGAGTTTAA
CTGAACACAAGAGCTTTGGAGCTTCGGTCTTGGACCGTTTCCTGAATTTTCGTTATCTCT
AACGGAAGTTTTCGAAAAGGAAATTGTTCAATATCTAAGATAGGA

Reference(s)

Rothbächer et al. (2007). A combinatorial code of maternal GATA, Ets and beta-catenin-TCF transcription factors specifies and patterns the early ascidian ectoderm. Development 134(22):4023-32

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