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CIS-REGULATION

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  1. Region 'REG00000439' > 
  2. Region 'REG00000382'

Cis-regulatory Region

Name

Ci-fog -290/1 bra enhancer added

Short name

n/a

Region ID

REG00000382

Status

Curated

Origin

engineered region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Ute Rothbächer (2008-03-09)

Annotator

Clara Degos (2010-07-22)

Curator

Delphine Dauga (2010-02-24)

View position in WashU

Description

Hierarchy of Regulatory Regions

Modification of Ci-fog -290/1 by insertion

Regulated gene(s)

KH2012:KH.S1404.1 (TBX19; TBX6; TBXT)

Construct(s) made to test this region

CONS00000369: pfog -290/1 bra enhancer added::NLS-lacZ

Show in situ data
Overview of functional TF binding sites in this region

5,8016,207

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [5,801 / 6,207] on scaffold KhS1404

This sequence was based on JGI Version 1.0. The Ci-bra enhancer covering position -470 to -62 was inserted upstream of pfog.

Show sequence

Length: 697

CATTATGTGTGTTATTTTTGTATAGACCTGAAACAAAAATACTTTCTTGGAAAAGCTGTT
GTTGGCCAACTATTTAAATGAACTTACTGTGACCACCTGCCTTGTCAGCTGAGATTAATG
TCTCTCTACTTTAGAGTTTTAATTTAAACTGCCTTCTTCTCTTGTCAATATAATATCAAG
TTTGCATGATTGACAATGGGTCGGTACAATACACGAAGCTTATTCACTATCAGAGTTTAA
CTGAACACAAGAGCTTTGGAGCTTCGGTCTTGGACCGTTTCCTGAATTTTAACACACCCA
ACGTACAATAAAACTTACGGCAAATTGTAGTTAAAATTCATAATTACAAAACAATAAAGA
TCATATAAACAAAATATTAAAGATCATATTAACAATATAATATAGATCATATTAATAGCG
ACAAACCTTATCTGGTGTTACGTCACAATACAAACAAAATATTTTGACATGTCAATCAAA
ATCGGAAACCAAGTTTCAACTTCCCACGCAAGACAATGGGAAAGTAACACGTCACAATAC
ACTTGGTGACGTCATATCACTAAAACAAACACAAGGTGTTCGATCCAGCTGTGAAAGTAA
ACATAGAGCGCCACCACACGAGCAACCCTCACAGCTGGATGCCACCACCTACGGCGCACT
TTCAACAAACATAAAATTTCAAAAAGAAGAAGTTATG

Reference(s)

Rothbächer et al. (2007). A combinatorial code of maternal GATA, Ets and beta-catenin-TCF transcription factors specifies and patterns the early ascidian ectoderm. Development 134(22):4023-32

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