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CIS-REGULATION

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  1. Region 'REG00000380'

Cis-regulatory Region

Name

Ci-fog -314/1 intron deleted

Short name

n/a

Region ID

REG00000380

Status

Curated

Origin

engineered region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Ute Rothbächer (2008-03-09)

Annotator

Émilie Carmona (2008-04-04)

Curator

Delphine Dauga (2010-02-24)

View position in WashU

Description

Hierarchy of Regulatory Regions

Modification of Ci-fog -314/1 by deletion

Regulated gene(s)

KH2012:KH.C10.574 (ZBTB24; ZNF226; ZNF441)

Construct(s) made to test this region

CONS00000367: pfog -314/1 delta intron::NLS-LacZ

Show in situ data
Overview of functional TF binding sites in this region

1,827,4791,827,708

Motif Name Binding Factor(s) Sequence Position in Region Comment
1 ZnF_(GATA) n/a GATA [-22 / -19]
2 ZnF_(GATA) n/a TATC [-15 / -12]

Sequence

Aniseed Coordinates: [1,827,479 / 1,827,708] on scaffold KhC10

This sequence was based on JGI Version 1.0. The intron deleted (position -84/-24) was replaced by "-".

Show sequence

Length: 314


CATTATGTGTGTTATTTTTGTATA------------------------------------
------------------------TACTGTGACCACCTGCCTTGTCAGCTGAGATTAATG
TCTCTCTACTTTAGAGTTTTAATTTAAACTGCCTTCTTCTCTTGTCAATATAATATCAAG
TTTGCATGATTGACAATGGGTCGGTACAATACACGAAGCTTATTCACTATCAGAGTTTAA
CTGAACACAAGAGCTTTGGAGCTTCGGTCTTGGACCGTTTCCTGAATTTTGAGATACTTT
ATCTTGGTCTTCTC

Reference(s)

Rothbächer et al. (2007). A combinatorial code of maternal GATA, Ets and beta-catenin-TCF transcription factors specifies and patterns the early ascidian ectoderm. Development 134(22):4023-32

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