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CIS-REGULATION

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  1. Region 'REG00000369'

Cis-regulatory Region

Name

Ci-fog -2000/1

Short name

n/a

Region ID

REG00000369

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Ute Rothbächer (2008-02-25)

Annotator

Émilie Carmona (2008-03-26)

Curator

Delphine Dauga (2010-02-24)

View position in WashU

Description

Hierarchy of Regulatory Regions

Regulated gene(s)

KH2012:KH.C10.574 (ZBTB24; ZNF226; ZNF441)

Construct(s) made to test this region

CONS00000357: pfog -2000/1::NLS-lacZ

Show in situ data
Overview of functional TF binding sites in this region

1,825,7911,827,792

Motif Name Binding Factor(s) Sequence Position in Region Comment
1 ZnF_(GATA) n/a tatc [1,827,489 / 1,827,493]
2 ZnF_(GATA) n/a gata [1,827,497 / 1,827,500]

Sequence

Aniseed Coordinates: [1,825,791 / 1,827,792] on scaffold KhC10

This sequence was based on JGI Version 1.0.

Show sequence

Length: 2,002


CATTATGTGTGTTATTTTTGTATAGACCTGAAACAAAAATACTTTCTTGGAAAAGCTGTT
GTTGGCCAACTATTTAAATGAACTTACTGTGACCACCTGCCTTGTCAGCTGAGATTAATG
TCTCTCTACTTTAGAGTTTTAATTTAAACTGCCTTCTTCTCTTGTCAATATAATATCAAG
TTTGCATGATTGACAATGGGTCGGTACAATACACGAAGCTTATTCACTATCAGAGTTTAA
CTGAACACAAGAGCTTTGGAGCTTCGGTCTTGGACCGTTTCCTGAATTTTGAGATACTTT
ATCTTGGTCTTCTCCAGGAAGCTAGCCTTCTTTCTCTTGTTTTCTCGTTACTGCTTGTTT
TATCGCTTGCTCGATAAGCAAGATAAGAGCTAGAGCTCTGAGTGATGTCGCCCAAACCGC
GCTGACTGAATTCTATCAGCCGTATGTTTGTCTTCGGAATAGATTTGATAAGACCATGTT
TGTTTTTCATGAATTATATTATTACAGCACGAGTAATAACAAGGTTGTTTTCTATCTTAC
TAGCTGATGCCATCATGTATAGAAATATTAACTCAATCGAAAACATCGCTATTCAGTTGA
CAACCCTAACAATTTTGAGCAACTCGATACTAAAATGTCCCGAGTGAAGTTATACCTAAC
GAGCAGCATGACGCCGAAACAAACATCGTTTTAAACATGAATAAATTATTAAAATAGAAG
ATTTACAACAAAAGTTCGATTTAAAGAATATATTTACTGTTTTATTTTTCCCATCTTAAT
TGTTAACACTTTTAAGTGAAAGCAATACCGCCATATTGTATTTAACATATTTTGTTAAAT
CCTGATGTGTATTTATCCCAAAAACGTGATGCATAATAAAGTGATACAAACTGAAACATT
TTGTATGTTTGGTATTATACTGCATAAATGGATTATTTAGCGTCAAAATTTAAATAGATA
CGAGGGCTTACATTTTGACAAAATTTCATTTATTAGTGTTGCCGGATACCAATAAATAAT
ACCTGACGTCAGTTATAGCTTAACTTTTTAGGTAGTGCGTGGTATACAATCTAATTATAA
TGCGCCAATTATATTGTTCATGTCGTATACTGCCGCGTTTAATTGCTTGTCGATTTCTCA
GTTAAATATGCACAACCCAAAGATTCCTGGTCCACTATACGGATAGATCATAACACGAGA
TCATACGTTTAACAAATCTATAAATACATGCAGGGTATAGTTTTTTTATAACGCCATTTT
TTTTTATAATATATATAGTATGGGTGGGGGAAAACGGGACACCTTTGGCACATATAATAC
CTACATATTATGATCATGTTTTAAACAATCAACAACGGTCTATGAAAGTCATGGGAATAC
GGTTTTCTAATTCTTTGAATGTTCTTTGTTTACTAAATACCGTATGTTTAAATTATAAAG
TAAGTAATACAAAATCAATTAAATTTGTATGATGCTGTTACACGTGGTGCTCGGTAAATC
ATATTAAAACTGTCAACATTTTTTGGTAGTTTGTTAATTTGAATCATCAATCCAGTATCG
TAATTTAATAAAATAAGCTGAAATATTTCAGGCCATTTTAAAAACTGGGATATTAAAACA
AGAAAAATGGGCAGTGGTCAATATTCCTTAAATTAGAAAAGAAATATATAAAGTTTACGT
GTCATAAAACTAGCTCGCCTGTGTTCGAATTTCCAAAGTTACACCTGTTGTGCGAATAGA
TAAATTACTTCTCGTATGGTTTAATATATTTCTTTGAAGTGTATATGATAGTACTAATTC
GTGGTACCACACAAAACCATCGTAGATTTTGGGTTTGGAAATATTGGGCAATGAGTGCTT
AAGGGTCCCATCTTTCCCCATTCTAGAATATACAAAGCGAGAGATTGTTAAAAACTTTAC
AATCAAACCGCATTTACTAAGATTCTGGCTCTACTGCGCCCCCGTGTGGTGTTACAATAG
TTGCATATATCTCAGTATTTTA

Reference(s)

Rothbächer et al. (2007). A combinatorial code of maternal GATA, Ets and beta-catenin-TCF transcription factors specifies and patterns the early ascidian ectoderm. Development 134(22):4023-32

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