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CIS-REGULATION

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  1. Transcript 'KH2012:KH.C10.571.v1...'
  2. Region 'REG00000346'
  3. Region 'REG00000647'
  4. Transcript 'KH2012:KH.C10.307.v1...'
  5. Region 'REG00000368'

Cis-regulatory Region

Name

pfog314::NLS-lacZ

Short name

n/a

Region ID

REG00000368

Status

Not Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

no_output

Author

Ute Rothbächer (2008-02-25)

Annotator

Émilie Carmona (2008-02-25)

Curator

Émilie Carmona (2008-02-25)


Description

This region led to a dramatic reduction in lacZ expression.

Hierarchy of Regulatory Regions

Construct(s) made to test this region
n/a
Overview of functional TF binding sites in this region

1,827,4761,827,790

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [1,827,476 / 1,827,790] on scaffold KhC10

Show sequence

Length: 319

AGGCTGGAGAAGACCAAGATAAAGTATCTCAAAATTCAGGAAACGGTCCAAGACCGAAGC
TCCAAAGCTCTTGTGTTCAGTTAAACTCTGATAGTGAATAAGCTTCGTGTATTGTACCGG
CCCATTGTCAATCATGCAAACTTGATATTATATTGACAAGAGAAGAAGGCAGTTTAAATT
AAAACTCTAAAGTAGAGAGACATTAATCTCAGCTGACAAGGCAGGTGGTCACAGTAAGTT
CATTTAAATAGTTGGCCAACAATAGCCTTTCCAAGAAAGTATTTTTGTTCCAGGTCTATA
CAAAAATAACACACATAAC

Reference(s)