Aniseed - Cis-regulation

Cis-regulatory Region

Name

pfog314::NLS-lacZ

Short name

n/a

Region ID

REG00000368

Status

Not Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

no_output

Author

Ute Rothbächer (2008-02-25)

Annotator

Émilie Carmona (2008-02-25)

Curator

Émilie Carmona (2008-02-25)

View position in WashU

Description

This region led to a dramatic reduction in lacZ expression.

Hierarchy of Regulatory Regions

pfog314::NLS-lacZ REG00000368 [ no_output ]

Regulated gene(s)

KH2012:KH.C7.523 (SOX11; SOX12; SOX4)

Construct(s) made to test this region

n/a

Overview of functional TF binding sites in this region

1,827,4761,827,790

	Motif Name	Binding Factor(s)	Sequence	Position in Region	Comment

Sequence

Aniseed Coordinates: [1,827,476 / 1,827,790] on scaffold KhC10

Show sequence

Length: 319

AGGCTGGAGAAGACCAAGATAAAGTATCTCAAAATTCAGGAAACGGTCCAAGACCGAAGC
TCCAAAGCTCTTGTGTTCAGTTAAACTCTGATAGTGAATAAGCTTCGTGTATTGTACCGG
CCCATTGTCAATCATGCAAACTTGATATTATATTGACAAGAGAAGAAGGCAGTTTAAATT
AAAACTCTAAAGTAGAGAGACATTAATCTCAGCTGACAAGGCAGGTGGTCACAGTAAGTT
CATTTAAATAGTTGGCCAACAATAGCCTTTCCAAGAAAGTATTTTTGTTCCAGGTCTATA
CAAAAATAACACACATAAC

Reference(s)