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CIS-REGULATION

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  1. Transcript 'Moocul.CG.ELv1_2.S44...' > 
  2. Transcript 'Phmamm.CG.MTP2014.S7...' > 
  3. Transcript 'Haaura.CG.MTP2014.S9...' > 
  4. Transcript 'KH2012:KH.S437.3.v3....' > 
  5. Region 'REG00000367'

Cis-regulatory Region

Name

Ci-multidom -1393bp/TATAA box

Short name

n/a

Region ID

REG00000367

Status

Not Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Izumi Oda-Ishii (2008-01-14)

Annotator

Delphine Dauga (2008-01-15)

Curator

Delphine Dauga (2009-08-14)

View position in WashU

Description

This region contains putative T-box half sites (TNNCAC) and putative Ci-Bra binding sites (TCACAC and TCGCAC).

Hierarchy of Regulatory Regions

Regulated gene(s)

KH2012:KH.L50.6 (DLK2; DLL1)

Construct(s) made to test this region

CONS00000354: pMultidom pbra -1193/TATAA::LacZ

CONS00000353: pMultidom pfkh -1193/TATAA::LacZ

CONS00000352: pMultidom -1193/TATAA::LacZ

Show in situ data
Overview of functional TF binding sites in this region

36,69738,089

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [36,697 / 38,089] on scaffold KhS489

Sequence was found in JGI V1.0, using information from fig. 8 of the publication.

Show sequence

Length: 1,393

CCTTTGTAAAATACGGATCGGTTTCTTTTAAGCAAGTTTAATGGAACTAAGAAACTTTTT
GTATAAATCAAAACATCGAAACGACAGTGTATATAACACAATGTAAATAAAAAAACCATA
CATATACAATAACACAATCACCTGTACGTTTTGAAACTTGTAAGCTGGCATGAGGTGTGA
AACAACACTCAATATATTAACTTGATTAAAACAACGAAGACATTTTTTCAGCAGTAAAAC
GACAGTTGTTAAAACATACTATGGGCATAAAAACTTCTTGAGTTAAATATATAAATAAAA
GCGAGGATGGTAAACTTAGATAATATTAATCAGGTCTAATATTCCCACCAATATAATTCG
ATTCACGTCAAACTTTGCCAGCTATGTTTCGTCTTAAACGATTAATGCAACTTATTTACG
TCATTTAAATTCCTATAAGTGTACCTGCCAAACCACAAGTCATATTTCAGCCTCAGATTA
GTAAGACTTATACCGCGTTTGTTTATTTCGCTACCAGTCGGATTGAAATGCAATAAGTAA
GAATCTTTTGCACGGAATCTAAAAATAATTGCAAGGCCAAAACAGTCTTGACGTGTAAAT
GACGTCAATTAGTTATCTTCCAAAACAGAATACGCCGTGTATGATTAATAGCCGGACAAT
GGGGATTACTTGGAAGCCGTTACAAAAAATGCAAAGTCGACATTATTTTTTAATCGTTCT
ATAAACAATATAAAAACAACATCTATATAAAGGTTCGTATGGGATAGTTATTATGTTGTC
TATAAACTCATATATTTGGAGTACAAACTACCACGCGGTTTGCACCAATAACAGTGTCAA
CCTGCATTTCCAAGAATTATATTATTGAATTTTAAAATAAACGCATTTCGAAATTTAATA
CAAAACAGAATTTCCCAAATTGGATTAAATTGAATAAAAAACACTCATAGTTTATGAAAC
TTAATATTTGTGGGTAATTGGGGACCTACAAATAATTGAATTAAGAAATCACGAATCGCA
CCATGTTGTTAAACTTTGGAGATTACTACGACGAGAAAAACTTTTCAAGTCAGCTACAAC
TTGCAAGAAAGTTACGCGGGTATATAAAGTCGGGCGTGGAGAAATAACGAGAACACAAAG
CAGACATGGAGTCGAGAGAAGCAAGACGACCAACATTGTTTGTTTTTATCATCGTTTTGT
GCATTTGCTTTGGCGAAGGTAAGTTATCTGGTTATGATTTTAAAAAAAAAGATTTGCATT
TATATTAAAACAGAACCAAACATAAATACAGTAGGGTGGGGAAGACGGGACACTTTTAAA
GCTGCAGTTAACCTGATCGTGTTTTAAACAATTAACAACGGTCTATGGGAATCGTGAGAA
TGTGGTTTTATAA

Reference(s)

Oda-Ishii and Di Gregorio et al. (2007). Lineage-independent mosaic expression and regulation of the Ciona multidom gene in the ancestral notochord. Dev. Dyn. 236(7):1806-19

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