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CIS-REGULATION

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  1. Transcript 'KH2012:KH.L149.21.v2...' > 
  2. Molecular Tool 'Dll-b>noggin (Imai 2012)' > 
  3. Region 'REG00000365'

Cis-regulatory Region

Name

Ci-delta2 -1654/68

Short name

n/a

Region ID

REG00000365

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Yukio Ohtsuka (2008-01-02)

Annotator

Émilie Carmona (2008-01-02)

Curator

Delphine Dauga (2010-06-07)

View position in WashU

Description

This region is active in part of trunk and in part of epidermis.

Hierarchy of Regulatory Regions

Modification of Ci-delta2 -1816/235 by deletion

Regulated gene(s)
n/a
Construct(s) made to test this region

CONS00000350: Ci-delta2 -1654/68 bpFOG::LacZ

Show in situ data
Overview of functional TF binding sites in this region

31,41233,133

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [31,412 / 33,133] on scaffold KhL50

Sequence from JGI V1.0

Show sequence

Length: 1,722

ATGCGTGTGGCGACAAACTAGTTCTACATCTGCTTAAGTTGGAATATTCGGACCTCATTG
TTTCGCAGCGGAATAGCGGTTTGGGAATTCTAGACAGGAAGCACGAAGTTCAAATGCATC
GATGCTATTATTACGTCACAATACAAATCGTGGCTTAGATAATAAAGATGTCTCGATTTG
TCATAACAGCAGGTTGTTCTTGATATTATGACATCACAATGCCACGCGTCTAGTACGAAC
TTGTGTTCGCTATTGTACAACGTCTGTCGTATGCACTACGGTAGACTTGGTAAGGCGTAT
AATTTTTATTACTCTGTACAAAGATGGCACGCTGTGAGGCGCGTGGGCCGTTTGTTCGGC
AAATTTTACTTCGGTTTTGTTCTAGAAAAACTTCTGCTCCGGCTAGCAGCAGACCCGCGT
TCGCCGCCCGATTTAAATAAACAGATTTCGAAACGCTTGCCCGCTCGTACAGACCTGCTA
CCCGGCATTGTTGGTACTCGCCGCTACCCAACTGTCGCGCTTTATTTTAGTTTGTTTTTA
GTCGCGCGCCTTTCTTACTACAGCTCGTGTTTCGGCCCCGCTACTAATCGCTGCTGAGTA
GTCTGCCACTCTGCGCGGGGCAGGTGTTATCGTGGGCAGTGGAATATTCCCTTAAAGAGC
TGAGTCCCAGTCGCTAGTGGATCATAACACAGTCGGTCCAGTGGCGTGCTCTCTCTATTT
TACTTGGCTGCCATGCAAGTGGTAGACGGAAGGATTAAAGGTTTGTTTGTGTCGATCGCT
TTTAGCTCAGAGATGCATTGAGTCGTAGACTATAGGAGGATTATTACGAAACAATAGCGG
CGCACGACCATGATTATTACGTCAGGATTAACAATTTAAAACGTCGCAAAAAAATCAGCA
AATATATTCAAGCGAGTAGCGTACAATGAGTCAGTGTTGAGATCGCTAACCTAATGTGGG
GTGAGAGAGTGTATTATGTATAAGCAAGTAAATGTTACCGGTATATGACTTTTAGGAGAT
TATGTGAAGTTATATAATATAAAGTAATTGGAATTTTAGTTTCCAATAATTTGATTTCGT
TATCGTATAATACAGCCTGGTGAGGTTCTCACGCCAAAAGCCAAGCCATCCAGCGTATGC
GGCTTGTTTGCCTGGTGTAAACAAATTAATGAAAGGTGCTAGACTATAAGAGACTCAAAT
AAAATGCGGAATGAACTGGTCATTAGAGACAGTTGAGTAGGGCGAATGGGAACGCCTATA
GTTACGTTACGGGCGTATGAGACATGGTATGCAGTGTCGGTGACGTTCACCGGGTTTGTT
AAACTTTCCCACGGTCCAAGTTACCGGTGAGCGCCCACGGCAATCGCTGAGATATTTGTG
TCGATCACTTGCGTAGAAATTGGAAATGATTTACAAACAATTGCATGAGTGATGTGACGG
TTTGTTTTACACAGTAAGGTGCAGTTGGTAGGGCTGTATACATGGGTGGCTTGTAAAGCA
CATTGATATAAGCACCGTGGTAGCGTGTACAATGGTAGCATCGTGTAGTTCTAAAAATGT
AGACAGATTGTTTTTATTGTTACGTCACAATGCAGGCAAGGCGCCGCGAAATCGGATTTT
CATGCGTTTTACGAATTTTTCTCTTTTGTTGCAGGTTTTAACTGCGTTAAAAAAAAACTG
AAACCGATAGATTGTGTTGCAAGGTGATAAAACGTGGTTGGG

Reference(s)

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