Aniseed - Cis-regulation

Region 'REG00000365'

Cis-regulatory Region

Name

Ci-delta2 -1654/68

Short name

n/a

Region ID

REG00000365

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Yukio Ohtsuka (2008-01-02)

Annotator

Émilie Carmona (2008-01-02)

Curator

Delphine Dauga (2010-06-07)

View position in WashU

Description

This region is active in part of trunk and in part of epidermis.

Hierarchy of Regulatory Regions

Modification of Ci-delta2 -1816/235 by deletion

Ci-delta2 -1816/235 REG00000363 [ no_output ]
- Ci-delta2 -521/68 REG00000364 [ regulatory_region (extended_promoter) ]
- Ci-delta2 -1654/68 REG00000365 [ regulatory_region (extended_promoter) ]

Regulated gene(s)

n/a

Construct(s) made to test this region

CONS00000350: Ci-delta2 -1654/68 bpFOG::LacZ

Show in situ data

Overview of functional TF binding sites in this region

31,41233,133

	Motif Name	Binding Factor(s)	Sequence	Position in Region	Comment

Sequence

Aniseed Coordinates: [31,412 / 33,133] on scaffold KhL50

Sequence from JGI V1.0

Show sequence

Length: 1,722

ATGCGTGTGGCGACAAACTAGTTCTACATCTGCTTAAGTTGGAATATTCGGACCTCATTG
TTTCGCAGCGGAATAGCGGTTTGGGAATTCTAGACAGGAAGCACGAAGTTCAAATGCATC
GATGCTATTATTACGTCACAATACAAATCGTGGCTTAGATAATAAAGATGTCTCGATTTG
TCATAACAGCAGGTTGTTCTTGATATTATGACATCACAATGCCACGCGTCTAGTACGAAC
TTGTGTTCGCTATTGTACAACGTCTGTCGTATGCACTACGGTAGACTTGGTAAGGCGTAT
AATTTTTATTACTCTGTACAAAGATGGCACGCTGTGAGGCGCGTGGGCCGTTTGTTCGGC
AAATTTTACTTCGGTTTTGTTCTAGAAAAACTTCTGCTCCGGCTAGCAGCAGACCCGCGT
TCGCCGCCCGATTTAAATAAACAGATTTCGAAACGCTTGCCCGCTCGTACAGACCTGCTA
CCCGGCATTGTTGGTACTCGCCGCTACCCAACTGTCGCGCTTTATTTTAGTTTGTTTTTA
GTCGCGCGCCTTTCTTACTACAGCTCGTGTTTCGGCCCCGCTACTAATCGCTGCTGAGTA
GTCTGCCACTCTGCGCGGGGCAGGTGTTATCGTGGGCAGTGGAATATTCCCTTAAAGAGC
TGAGTCCCAGTCGCTAGTGGATCATAACACAGTCGGTCCAGTGGCGTGCTCTCTCTATTT
TACTTGGCTGCCATGCAAGTGGTAGACGGAAGGATTAAAGGTTTGTTTGTGTCGATCGCT
TTTAGCTCAGAGATGCATTGAGTCGTAGACTATAGGAGGATTATTACGAAACAATAGCGG
CGCACGACCATGATTATTACGTCAGGATTAACAATTTAAAACGTCGCAAAAAAATCAGCA
AATATATTCAAGCGAGTAGCGTACAATGAGTCAGTGTTGAGATCGCTAACCTAATGTGGG
GTGAGAGAGTGTATTATGTATAAGCAAGTAAATGTTACCGGTATATGACTTTTAGGAGAT
TATGTGAAGTTATATAATATAAAGTAATTGGAATTTTAGTTTCCAATAATTTGATTTCGT
TATCGTATAATACAGCCTGGTGAGGTTCTCACGCCAAAAGCCAAGCCATCCAGCGTATGC
GGCTTGTTTGCCTGGTGTAAACAAATTAATGAAAGGTGCTAGACTATAAGAGACTCAAAT
AAAATGCGGAATGAACTGGTCATTAGAGACAGTTGAGTAGGGCGAATGGGAACGCCTATA
GTTACGTTACGGGCGTATGAGACATGGTATGCAGTGTCGGTGACGTTCACCGGGTTTGTT
AAACTTTCCCACGGTCCAAGTTACCGGTGAGCGCCCACGGCAATCGCTGAGATATTTGTG
TCGATCACTTGCGTAGAAATTGGAAATGATTTACAAACAATTGCATGAGTGATGTGACGG
TTTGTTTTACACAGTAAGGTGCAGTTGGTAGGGCTGTATACATGGGTGGCTTGTAAAGCA
CATTGATATAAGCACCGTGGTAGCGTGTACAATGGTAGCATCGTGTAGTTCTAAAAATGT
AGACAGATTGTTTTTATTGTTACGTCACAATGCAGGCAAGGCGCCGCGAAATCGGATTTT
CATGCGTTTTACGAATTTTTCTCTTTTGTTGCAGGTTTTAACTGCGTTAAAAAAAAACTG
AAACCGATAGATTGTGTTGCAAGGTGATAAAACGTGGTTGGG

Reference(s)