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CIS-REGULATION

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  1. Region 'REG00001297'
  2. Region 'REG00000200'
  3. Region 'REG00000364'

Cis-regulatory Region

Name

Ci-delta2 -521/68

Short name

n/a

Region ID

REG00000364

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Yukio Ohtsuka (2008-01-02)

Annotator

Émilie Carmona (2008-01-02)

Curator

Delphine Dauga (2010-06-07)


Description

This region is active in part of trunk and part of epidermis.

Regulated gene(s)

KH2012:KH.L50.6 (DLK2; DLL1)

Construct(s) made to test this region

CONS00000349: Ci-delta2 -521/68 bpFOG::LacZ

Overview of functional TF binding sites in this region

32,54533,133

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [32,545 / 33,133] on scaffold KhL50

Sequence from JGI V1.0

Show sequence

Length: 589

CGTATGCGGCTTGTTTGCCTGGTGTAAACAAATTAATGAAAGGTGCTAGACTATAAGAGA
CTCAAATAAAATGCGGAATGAACTGGTCATTAGAGACAGTTGAGTAGGGCGAATGGGAAC
GCCTATAGTTACGTTACGGGCGTATGAGACATGGTATGCAGTGTCGGTGACGTTCACCGG
GTTTGTTAAACTTTCCCACGGTCCAAGTTACCGGTGAGCGCCCACGGCAATCGCTGAGAT
ATTTGTGTCGATCACTTGCGTAGAAATTGGAAATGATTTACAAACAATTGCATGAGTGAT
GTGACGGTTTGTTTTACACAGTAAGGTGCAGTTGGTAGGGCTGTATACATGGGTGGCTTG
TAAAGCACATTGATATAAGCACCGTGGTAGCGTGTACAATGGTAGCATCGTGTAGTTCTA
AAAATGTAGACAGATTGTTTTTATTGTTACGTCACAATGCAGGCAAGGCGCCGCGAAATC
GGATTTTCATGCGTTTTACGAATTTTTCTCTTTTGTTGCAGGTTTTAACTGCGTTAAAAA
AAAACTGAAACCGATAGATTGTGTTGCAAGGTGATAAAACGTGGTTGGG

Reference(s)