Aniseed - Cis-regulation

Region 'REG00000359'

Cis-regulatory Region

Name

Ci-chordin -375/-78

Short name

n/a

Region ID

REG00000359

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Yukio Ohtsuka (2008-01-02)

Annotator

Émilie Carmona (2008-01-02)

Curator

Delphine Dauga (2010-06-07)

View position in WashU

Description

This region is active in notchord, brain, nerve cord, muscle and mesenchyme.

Hierarchy of Regulatory Regions

Ci-chordin -375/-78 REG00000359 [ regulatory_region (extended_promoter) ]

Regulated gene(s)

KH2012:KH.C6.303 (KH.C6.303)

Construct(s) made to test this region

CONS00000345: Ci-chordin -375/-78::LacZ

Show in situ data

Overview of functional TF binding sites in this region

1,223,1021,223,398

	Motif Name	Binding Factor(s)	Sequence	Position in Region	Comment

Sequence

Aniseed Coordinates: [1,223,102 / 1,223,398] on scaffold KhC6

Sequence from JGI V1.0

Show sequence

Length: 297

GTGACGTAGCCTTTTTCCCGTGACGTCACGGTTCATTATTACGTCACAATTCCGACTGGA
GCCTCGAAGCGGGATAGCAGGTTCGGGACAATGGCCTTTGTGGGCAAAAACTGGGCAGGC
CGCGCGTGTCTGCACCAATACGACGTCACATTACCTGCTGTGACGTCATATTACATGCTG
TGACGTAACAGAACTCGTTTCCGAACTTGCAGCTAGCCAAGTGCAGAATCCGGTGGAATA
TTTATTTTATAAAAGTGTGAATTTATTTGGCCGAGTCATGTGTTTGGTGACGTGAGA

Reference(s)