- Region 'REG00000346'
Cis-regulatory Region
Name
Ci-FoxB -3952/-3521
Short name
n/a
Region ID
REG00000346
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(enhancer)
Author
Yukio Ohtsuka (2007-12-28)
Annotator
Émilie Carmona (2010-06-07)
Curator
Delphine Dauga (2010-06-07)
This region acts as an enhancer.
Ci-FoxB -3952/-3521 pBra::LacZ: expression in notochord and mesenchyme.
Ci-FoxB -3952/-3521 pFOG::LacZ: expression in epidermis.
Coordinates are based on JGI transcript model.
4,651,5174,651,947
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [4,651,517 / 4,651,947] on scaffold KhC4
Sequence from JGI V1.0
Show sequence
Length: 431
TGTTTGCGGGAGCGGATATTTACGCAATTCTCCGCGTGTATAGTGTGACACCTGGGCCGA
CATTTTTCGTTCAAAATGGCGGGATTCGGGTGCTTGGTATCCCCGCGGTGACCTCGCGCG
CTCCCGAGCTACGTCATCAATCAAACAAATGCCACAAAGGTGCGAAAAGGCGAAAGACCG
CGACTATAAACAATCGTAAACAAAGAAGTCATTGTTTTATGTCGCCGTTTAAATGTGTTT
TATTTCATCACATATATGTGCACAGGTGTGCCCCTATATATATATATCTAAAACAACTTG
CAATGTACTTTTACATATAGTAGTAAACTGTAACTTATAAGCCGACACGAAGTGTGCGAA
ACATCCATGTTATAACGACATCCATTTATTCAATATGCATCTAATTTACATTACATAACG
CATACAGCATC
