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CIS-REGULATION

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  1. Region 'REG00000345'

Cis-regulatory Region

Name

Ci-FoxB -4260/-759

Short name

n/a

Region ID

REG00000345

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

no_output

Author

Émilie Carmona (2007-12-28)

Annotator

Émilie Carmona (2010-06-07)

Curator

Delphine Dauga (2010-06-07)

View position in WashU

Description

This region is the root of the FoxB analysis (meaning includes all regions tested), but it was not itself experimentally tested.

Coordinates are based on JGI transcript model.

Hierarchy of Regulatory Regions

Regulated gene(s)

KH2012:KH.L116.39 (KH.L116.39)

Construct(s) made to test this region
n/a
Overview of functional TF binding sites in this region

4,651,2094,654,709

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [4,651,209 / 4,654,709] on scaffold KhC4

Sequence from JGI V1.0

Show sequence

Length: 3,501

AAATAAACCAGATTTAACACTAAATGTCTCGCTTTTCCAATGCGCTATACTTTGAACATT
TTTAATCCACATTACTTAAAAAAGAAGCTCTTCTACTACACATATAATATATAAACCCGC
CTTCTCTATTTATATTGATTAATGCTTTACGCTGCTAACACGAACAAGTGATTTTCGACA
CGTGCAACCGCCTTTATATACTCGCACTTTTTTCCTTTTTTTCATCACTTCTCGTCCAAT
CACAACCCAGCATCGACATAGGAGGAACAATTGCGTCATCGCTGCGGGAGAAAATTTCAT
TGATTTTGACGTCACAAACAAGATTGTTTTGTTTTATTTGACAATAACAACTTCTGTTTG
ATATTTTGCAAATTAAATATTAAAGTAAATTTTACCAAAACATTTTCCATTTTTAAATAT
CAAATTTCGAAGTCAATAATTCATGGTTATTTATATAATTCTATAAACTGTCTTTGTTTA
CGACCAAATGGAATGCTAAAAGAAAATAAAAACATAGTCCATCTTACCGTAACCCACTAT
ATATTATATATCATTATGTAGCAATAAAATCAGTTTGTTTAAACAACAGAATCACATATG
TCTATATTTGTTTGTTTTTCAAAGTGATGAAGCAATTATTTTAATTGTTACGAAAATTAC
TAAAACTGCATTTAGAAATACTCGGTCAGTTTAATTTGTTTTATTTCACGTTCTGCTTGA
ACTTATAATTTAAAAAAATACGTCAAATAACCGTGACGCAACACGTGTGACGGCATCAAA
ATTCAATTAAATAAATACAGCAATATTTGTCAATTAAAAACAGATTCATTTGCGTCTTGA
AGGTCGTTACAACGGCAGCTGCGCGGTTTACGTTCGAATGCGTTGCTGGACGTCTGTGAC
GTCAGAACGAAATTTGCTTACGCATATAATGAAACGAATTTTTGTTGTGTTTGACTTCTA
CGTAACAATGAGTAGCGTGACGTCATTGTTCGCAGGTGTCGGTTTTAAACTTAGAAAATA
AATTTACTTTTGATTTAATTAATTTGTTTTAAATTAAAATGTCTTAAAGTCGGAAAATAA
ACAGAACGTCGCTGGCCGCTTGTAAACTTAAGTTTAAACGATTTTTTTGCAAATTGTAAG
ACAGTTTAAGGTTTTATTAACCTTTACCATTTGGGCTTATATGCTTTCTATCGTTACACC
CCAAATTGTTAAAGTTTTGAACCCGAAAAAAAAGTTAAACTTACAAAAGTTAAGCTTTTT
AAAAAAGTTAAACTTACACATTGATTAATGTATAGTAGGGAGGGGGAAGATGGACAACCC
TTTGATTCTATTTTCTCGTCCCATTTGGTAGTAAACAAAAAACATTTAAATAATTATAAA
ACCGTATCCTCACGATAAAACAATCTTGAAAACGTGGAGCATCTTATTACCCCAACTTAC
TATATAGTAGGGTGGGGGAAGATGGGACACTTTTTCGTTTAGTTTTCTCTTTTCGTTTGG
TAGTAAACAAAAAAATTCGATAAATTATAAAACCGTATCTTCATGACTTCCACAGACCGT
TGTTAATTGTTTAAAACACGATCAGGCTATTTGGGTATTATGTGTTAAAGATGTCTCATC
TTCCCCCACTCTACTATATATCAATTTGTTTAAGTGAATTACCACTTCATTTGTTCGTTC
AGCGAAAGAAAGTTGGTTTTCAATTAACAATCTTATTTATTTCAGTCCACCCAACTGTCT
CATCAAATTAGCAACAACCTGTATTGGAGTAATGGTCAATTTTTCGCTTATTTGGCCACG
GTAATTGCTTGTGTGTGTTGCTTATTTATTCCCATACAATATGTAGTGTTAGTGTAACCC
TCAAAGGTGTACGATGTCTTTGTAATGTGCAGTCAGTGGCAGGGATGTATGAGAACGACA
TGCAAAGCTTTATTTTATTGAAAAAATACATAACAGATAATACGCCGGTGTCCGCTTGGG
ATTTAGTGCAGCTATTCACACGAAAAACAAGTACAGGCGTTTCTGGATAGTATGGGAAAA
GACAGGCAATCCTATTTTAATTAACTTGCTTGAAAAAGAGCGTCGTTTTGTCGAGACATT
GAAACAACGGCGCCGGTTTGGCCGTTTCGTAAATTAAATACAATTTAGGATAATGTAGCG
TTAGCCTTGATTTGGTAACTATATCTATTAGTATATCTGCATGGGAATCGTGGGTTTAAT
TCGTCAAGTAATCGTTTACACGCTCGTTTAAAGTTTGGATTAAACTTTCTAGTCTTTTCC
GGATTAAAGGATCTTTTGTCATCGCCGATTTAAGGTCAATGAATAATAAAAAACGCATAT
TGAAAATGTAACACAACCACTCTATTACATGGGGTTAATGAATAGGAATATCAACACAGA
AGCATTTGTTTTGTACTCTGGGGAAAATGGACGCCTTTAACACATAAAACCATACTTTCC
ATTTTTATATTTTTTTAACAACGCCGCTTTATAGTTACTTCACCTACTATAACCTATTCT
GCGCTGTTTTAATTTAAAAGAGCGATTAACTGCGTGCTGGACCCCCGTACATCTAAAATC
CATTATGTTGATTTAAACACATAAAAATACCGTTTTCGGTTACTATGACGACGTTTAAAA
TAGGAAACGATATAAGTTAATTAGTGAACAGGTGAAATGGTAAAGTACAGCTGCATATAC
ACCGCATTGGTGAAATGCATACAGCATTAGAAAACCGTGTTACGAAACCACACGAAGTAT
TTTGTTTGCGGGAGCGGATATTTACGCAATTCTCCGCGTGTATAGTGTGACACCTGGGCC
GACATTTTTCGTTCAAAATGGCGGGATTCGGGTGCTTGGTATCCCCGCGGTGACCTCGCG
CGCTCCCGAGCTACGTCATCAATCAAACAAATGCCACAAAGGTGCGAAAAGGCGAAAGAC
CGCGACTATAAACAATCGTAAACAAAGAAGTCATTGTTTTATGTCGCCGTTTAAATGTGT
TTTATTTCATCACATATATGTGCACAGGTGTGCCCCTATATATATATATCTAAAACAACT
TGCAATGTACTTTTACATATAGTAGTAAACTGTAACTTATAAGCCGACACGAAGTGTGCG
AAACATCCATGTTATAACGACATCCATTTATTCAATATGCATCTAATTTACATTACATAA
CGCATACAGCATCATTTACCCCTTTACTTGGATAGATTACTCTGTTAAAATAATCCTCGT
ATGTCTAATCTTTTATCTGGTGGATCATTCCATAAGCGAGCATGTGTGAGATCATAATAA
CACTTATGTCGTTCTTTGAGGTGTGGTTTATTAATCCACCCTCGGATTAAAATGGATAAG
ATCACGGCCTTGAATATTTGGTTTTAATTGCGATGGAATACAAGGGGTTTGAATGCTATG
TGTTTAACGCTTATGGAATGTAAAGTCTATATGTTTTCGGTAAACATTATTATGTAGGAT
TTTTTATACGTGTTTGGTAAA

Reference(s)

Khoueiry et al. (2010). A cis-regulatory signature in ascidians and flies, independent of transcription factor binding sites. Curr. Biol. 20(9):792-802

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