Aniseed - Cis-regulation

Cis-regulatory Region

Name

Ci-neurogenin -444/-61

Short name

n/a

Region ID

REG00000334

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(enhancer)

Author

Yukio Ohtsuka (2007-12-14)

Annotator

Émilie Carmona (2010-06-07)

Curator

Patrick Lemaire (2012-03-20)

View position in WashU

Description

This region, placed in front of the pfog basal promoter, drives expression in nerve cord, muscle and mesenchyme.

Coordinates are based on KH transcript model.

Hierarchy of Regulatory Regions

Ci-neurogenin -444/-61 REG00000334 [ regulatory_region (enhancer) ]

Regulated gene(s)

KH2012:KH.C6.129 (NEUROG1; NEUROG2; NEUROG3)

Construct(s) made to test this region

CONS00000319: Ci-neurogenin -444/-61 pFOG::LacZ

Show in situ data

Overview of functional TF binding sites in this region

1,502,3391,502,721

	Motif Name	Binding Factor(s)	Sequence	Position in Region	Comment

Sequence

Aniseed Coordinates: [1,502,339 / 1,502,721] on scaffold KhC6

Sequence from JGI V1.0

Show sequence

Length: 383

GGGATGAAACAGAGAGATCAGCCGAAGCACTGTGACGTCACAAATCGGAGAAAAAAGGCA
AATCTTCCAGCAAATGCGGGCGGCGACTTAGACGTTAGCAAACAAATGGATAGCGATGAA
ACAATAGCGTTTTCCGAGTGGAAACGAATCTCAAAAACCGAACAGACGACCGGGCCAATA
CCTGACCTTGACTCTGGGACGTAACAAAGCATGACCGCGGTTGGACACCGTTTTTTTGAG
TGGGAAAGTTACCTTGTCTGGCGATAGTATACGGGGACATATGCATGGGAACCTGGGAAT
TTTGCTGCGGCACCAGACATTACTATGTCTGTATTATATTCACCGCTTCTTCTGTGGGAA
AGTGCATTCGGTTCTCTTATACG

Reference(s)

Khoueiry et al. (2010). A cis-regulatory signature in ascidians and flies, independent of transcription factor binding sites. Curr. Biol. 20(9):792-802