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CIS-REGULATION

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  1. Region 'REG00001266' > 
  2. Region 'REG00001186' > 
  3. Region 'REG00001182' > 
  4. Transcript 'Haaura.CG.MTP2014.S7...' > 
  5. Region 'REG00000326'

Cis-regulatory Region

Name

Ci-COE -1043/-480

Short name

n/a

Region ID

REG00000326

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Yukio Ohtsuka (2007-12-11)

Annotator

Émilie Carmona (2010-06-08)

Curator

Delphine Dauga (2010-06-08)

View position in WashU

Description

This region is active in mesenchyme and in muscle in tailbud and larval stage.

Coordinates are base on KH transcript model.

Hierarchy of Regulatory Regions

Regulated gene(s)

KH2012:KH.C10.338 (NKX2-1; NKX2-2; NKX2-4)

Construct(s) made to test this region

CONS00000311: Ci-COE -1043/-480::LacZ

Show in situ data
Overview of functional TF binding sites in this region

33,67934,241

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [33,679 / 34,241] on scaffold KhL24

Sequence from JGI V1.0

Show sequence

Length: 563

AACGTAAATTTGCCTGTTGTTAAGCGGAGGAAAAAGTAATCTGCGTGAATGCGAAAAACA
CGATTTTGGAATCAGCGCCGGCAATGGTGTTTGTAAATAGGGGTGGCATACGCGTTTCGT
AGCGAAAGAGAGAATGAGGCGAAAGTCGACAGATGCACGCTCCGATTTATGAGACAGGAA
CCAGTCGCGAGGGCACGGAGGAAAAAGAACCTTACTCCAAGACATGCGCCGCCTTTTTTC
TTTCTGTCCTAGTCAGGAATACTAGAGTATAGAAGGCCACGCGTCGTGGAGTTTAAAACC
AGCAAGCCAGTGTCTCAACGGACACATCAATACAGAGACTTCTCTCAGTGGACAACTCGG
ACGATTCGCCACTAACTTGGTGGATTCGTCCCGGACGACCCATGGGCCGGGTCCCAGCGC
GCTAGTTGGCCACCATACAGTGTAGAATCAGCTAGATCGTCTCTGCGGATTTCGCAAATA
GATTGAGTTGGAGATAGCTTCCCGACCGGGATTTCGACTAATTTGCAATGTTAGTTATTA
ATCAAGGTGACAGTCAGGAGTTA

Reference(s)

Khoueiry et al. (2010). A cis-regulatory signature in ascidians and flies, independent of transcription factor binding sites. Curr. Biol. 20(9):792-802

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