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CIS-REGULATION

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  1. Region 'REG00000299'

Cis-regulatory Region

Name

bpHox3

Short name

n/a

Region ID

REG00000299

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(RNApol_II_core_promoter)

Author

Annamaria Locascio (2007-12-04)

Annotator

Clara Degos (2010-07-22)

Curator

Delphine Dauga (2009-08-19)

View position in WashU

Description

JGI transcript model was taken as reference for the region's coordinates.

Hierarchy of Regulatory Regions

Modification of Ci-Hox3 -450/174 by deletion

Regulated gene(s)

KH2012:KH.C1.38 (HOXA3; HOXB3; HOXD3)

Construct(s) made to test this region

CONS00000283: pHox3 -180/174::LacZ

Show in situ data
Overview of functional TF binding sites in this region

9,905,0639,905,415

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [9,905,063 / 9,905,415] on scaffold KhC1

This sequence was found with a blast on JGI site with the sequence includes in the publication listed bellow. This sequence was not exactly the same in the publication, it seems that the publication lacks few nucleotides.

Show sequence

Length: 353

TTAATGCAGGGCGTCCAGTTTGGATTTGGAACCTAATCTCGGAGATCAATCAACAGTCTT
CTTGGGTTTAAAGGAATTATAAAAAAACAAAAAAAAAATTGGATTTACGTGAAGATACGT
TTCACCGTAACGTCACAGATTGATCGACAAAGTGCATTATCAGCAAACAATCCGAGCAAT
GAAGAATGGGCAAGAGAAAGCACCAGCTGCGACCAAATATAGCGTCGCCGCGTCGAACAC
CCAGAATAGTGGAGATTACTTTGGTAAGAAGCGAGCGGGCAATAATATAGAAGATCTTGG
AAGTTATTACATGGGGGTTGAAGGACATAACACGACGAATGCAGCAATTGAGA

Reference(s)

Locascio et al. (1999). Patterning the ascidian nervous system: structure, expression and transgenic analysis of the CiHox3 gene. Development 126(21):4737-48

Fanelli et al. (2003). Interplay of negative and positive signals controls endoderm-specific expression of the ascidian Cititf1 gene promoter. Dev. Biol. 263(1):12-23

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