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CIS-REGULATION

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  1. Region 'REG00000294'

Cis-regulatory Region

Name

Ci-Hox3 -1500/174

Short name

n/a

Region ID

REG00000294

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Annamaria Locascio (2007-12-03)

Annotator

Delphine Dauga (2007-12-03)

Curator

Delphine Dauga (2010-02-24)

View position in WashU

Description

JGI transcript model was taken as reference for the region's coordinates.

Hierarchy of Regulatory Regions

Modification of Ci-Hox3 -3000/174 by deletion

Regulated gene(s)

KH2012:KH.C1.38 (HOXA3; HOXB3; HOXD3)

Construct(s) made to test this region

CONS00000281: pHox3 -1500/174::LacZ

Show in situ data
Overview of functional TF binding sites in this region

9,905,0639,906,736

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [9,905,063 / 9,906,736] on scaffold KhC1

This sequence was found with a blast on JGI version 1.0 with the sequence includes in the publication listed bellow. This sequence was not exactly the same in the publication, it seems that the publication lacks few nucleotides.

Show sequence

Length: 1,674

CCTTGCTTTAGTAAAGAACATTTACTTAGCATGGATTTAATTATAGAGATTTCGTTAATA
GAATTACACATGAGACATAAATTCGAGAATATCAATTTAAAAGCGAAAACTGAATTCTCG
TAAAGGTATTATACATTTATTTTTTCAAGCGTTTTTTTAAATTTGCAGCAGCCAGGGCAG
GAGTTTTATTTAGAAGTTTAAAACAATCGTTTACATTTCCGTGTTTGGTGTAAACCACTT
AATTCGTGCCTTGGCTGGCCGAACTACTTTGTGCATCTGCTCAACTATGTAAATGCCCAC
TACAGTCCTAATAATGACCACTATGACGTTGAAATGTGCATTATCACGTTTGCAAACATT
ATCTTTGCCCCATGAAGCGTGTGCTCTAAGTGTCGTAAAATTGTTGTCCCAAACACTCCC
CTCCGATCAAGCAAAATTTATTCCCCTAATGTGCTGCCACCAGAACTCGTATGCGTGTTT
ACACTTAGACATCACCTGTAGCTAATTTCCGCACGTAATTTGACCTTCTTTTAAAGTCAG
TGGTATTCAAATTTAAAGCAAAATAATATTTTTTGTATTAAATTTACAGCAAAATAATAT
TTTTATACTAATATCGTTGTTTTACAAGTTACATAGTCTGAGCGTTTACGTAATACATTT
TACAATTTTTCTTGGATAATTTTTAATTATAAGATAGACATGCTCAATTAGTTTATCACA
GTCAATTATCGAGTGGAGCATTTAAACAAAGTACTCTTGAAAAAATAACTTGTTTAAGCT
TAGCTGCGATTAAATCGACGATTATTAGTATATAAATACCTTCATCAAGTCGCTATGGTT
TATCAGGTAAACCTGAGAAGGCAATTACTTGCTGTGACTAATCTGGAATGCTGTTTTACA
TGTAACAAACGTTATTATTACGTCATTAAGATTTACTACGTCATAACAACCAATTAAAAT
CTACTTGAGGAAAACGATATTGTTGCGAAACAGTAATCGCATTAACGATAAATCTAGAAA
CACGGGTAGCGTGAACGTTAATGAGTTTCCTCGTTAGCGCTGAACGGGAAACGTTCTGGT
CATAATAATCGAACCACATTTGATGCTTGCGCGGTTACTACGAGTTCGGATTTGTTTACA
ATTTTTTAACAATTCTCAGACTGTTACAACGACTTTTTAAATAAAATTTTGACCTTTTTT
GAACAAAAAAATAACAAGTACATTTAAACTTATTATCCTAGAATTCAAGTTATTACAAAA
TATTCAATAATTAAGCAATATATTAAATGTATTTCATGTGAAATATTGAGAATAATTTTA
ATTAATGCAGGGCGTCCAGTTTGGATTTGGAACCTAATCTCGGAGATCAATCAACAGTCT
TCTTGGGTTTAAAGGAATTATAAAAAAACAAAAAAAAAATTGGATTTACGTGAAGATACG
TTTCACCGTAACGTCACAGATTGATCGACAAAGTGCATTATCAGCAAACAATCCGAGCAA
TGAAGAATGGGCAAGAGAAAGCACCAGCTGCGACCAAATATAGCGTCGCCGCGTCGAACA
CCCAGAATAGTGGAGATTACTTTGGTAAGAAGCGAGCGGGCAATAATATAGAAGATCTTG
GAAGTTATTACATGGGGGTTGAAGGACATAACACGACGAATGCAGCAATTGAGA

Reference(s)

Locascio et al. (1999). Patterning the ascidian nervous system: structure, expression and transgenic analysis of the CiHox3 gene. Development 126(21):4737-48

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