Aniseed - Cis-regulation

Cis-regulatory Region

Name

Ci-ELK -829/18

Short name

n/a

Region ID

REG00000269

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Yukio Ohtsuka (2007-11-25)

Annotator

Émilie Carmona (2010-06-09)

Curator

Delphine Dauga (2010-06-09)

View position in WashU

Description

This region is active in the central nervous system, muscle, notochord, endoderm, endodermal strand epidermis.

Coordinates are based on the longest KH transcript model.

Hierarchy of Regulatory Regions

Modification of Ci-ELK -981/7393 by deletion

Ci-ELK -981/7393 REG00000306 [ no_output ]

Regulated gene(s)

KH2012:KH.C8.280 (KH.C8.280)

Construct(s) made to test this region

CONS00000259: Ci-ELK -829/18::LacZ

Show in situ data

Overview of functional TF binding sites in this region

2,409,7162,410,562

	Motif Name	Binding Factor(s)	Sequence	Position in Region	Comment

Sequence

Aniseed Coordinates: [2,409,716 / 2,410,562] on scaffold KhC8

Sequence from JGI V1.0

Show sequence

Length: 847

CCAGGGTAAACAATGGATTAGGTGCAGATTTAAAATCATGAGGTTGTAATAACAATGGAA
CAGACAGGAAGTCGTAAAAAAGCAAATATCCCAAAGCGCCATGGCCACGAGAGAAATCCG
ATGCGGTGGTGTAATTACCGTCCTACGACCACACGGGAGACAGCAGTCGTCCGCCGGAAA
ACGAGAAAGGCGTTTCGTGTAAGCAACAAAGGGCCTTCTTTGCTACTCGCCTCTGTCCGT
TCTTTGTTCGGGCGAACGAGCTTCAGTGATTTTGTTTGTGCATCCCGGCGCCGACTTCCG
CCGACCGACGCGATAGCGCGCGGCGCGAGAAAAAAGAGAAGGCGGATGTACAGATGTCTT
TTAATTCCGGTTCTCTCTCGTATGGAGACCGCTTCTGTTTGTAACCCTATACTAGTGGCG
TCTCAACAACAGCTCACAGTCGACCAGGGTCGTGTCAGTAAAAGAAATCGTAAACGATAC
AATCACGCCCGTGAACCGGAGGCAGTGTAGTAAACGAGCGTGGAGGCGGAAACTACGTAA
ATTGTTATCATCTTAAAACAGAACAGGCCCAAGGCAAGAAAGGTTTTTACGGATAAGACA
AATGACGCAATGGTATAATTACTCAGAAACGTCAGTGCGGTCTATAATGTACGTTGGCCT
ACACGGTTCAAAGTTGTGACGTCCAAGGTATATAAGGGTTTTAGCACGGATGCCTATATC
CGGGTTAGGCAAGCTGGGATATGGTTCAGGTTCACGCTCTGTGTATAGAGCATAATTTGT
TGTTTGAGCTGTGTTATACAAGCACATTTGTAACTTGGTTTCTTCTTAGAGCAGAAATCG
ACGACAC

Reference(s)

Khoueiry et al. (2010). A cis-regulatory signature in ascidians and flies, independent of transcription factor binding sites. Curr. Biol. 20(9):792-802