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CIS-REGULATION

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  1. Clone 'AHC2BAA11YN12'
  2. Region 'REG00000261'

Cis-regulatory Region

Name

Ci-Gai1 -3176/-3090

Short name

n/a

Region ID

REG00000261

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(enhancer)

Author

Kusakabe team (2007-11-20)

Annotator

Clara Degos (2010-07-22)

Curator

Delphine Dauga (2010-02-24)


Description

Region from -4208bp to the start codon allows expression in the
nervous systems (in the adhesive organ, brain vesicle, visceral ganglion, and dorsocaudal epidermal neurons on the dorsal midline
of the tail) and in the mesenchyme. No GFP expression was observed in tissues other than the nervous system and mesenchyme cells.
The region between -3176 and -3090 indicates a highly conserved region, Gai1-CNR.

JGI transcript model was taken as reference for the region's coordinates.

Overview of functional TF binding sites in this region

4,936,4444,936,530

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [4,936,444 / 4,936,530] on scaffold KhC1

This sequence was found using JGI V1.0. Relative coordinates were taken in the articles (+1 refers to the first exon of JGI gene model).

Show sequence

Length: 87

CAAACCGAATACGCCCAACTATCGATCCACTCCGCTTCTGCGCGTTTCTTCTTTCGTTCT
TGATGACCTCATTTCAAAAATCGATTT