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CIS-REGULATION

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  1. Transcript 'KH2012:KH.C5.25.v1.A...'
  2. Transcript 'KH2012:KH.C1.1051.v2...'
  3. Molecular Tool 'FoxF[TVC]>Islet::WRPW (Stolfi 2010)'
  4. Transcript 'KH2012:KH.L108.45.v1...'
  5. Region 'REG00000237'

Cis-regulatory Region

Name

ci0100138569/TBCE -236/-40

Short name

n/a

Region ID

REG00000237

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

inactive_region

Author

Pierre Khoueiry (2007-11-12)

Annotator

Pierre Khoueiry (2010-06-08)

Curator

Delphine Dauga (2010-07-22)


Description

This region does not appear to regulate ci0100138569/TBCE.

Coordinates are base on the longest KH transcript model.

Overview of functional TF binding sites in this region

3,634,4353,634,629

Motif Name Binding Factor(s) Sequence Position in Region Comment
1 Ets n/a TTCC [3,634,455 / 3,634,458]
2 Ets n/a TTCC [3,634,477 / 3,634,480]
3 Ets n/a GGAA [3,634,500 / 3,634,503]
4 ZnF_(GATA) n/a TATC [3,634,537 / 3,634,540]
5 ZnF_(GATA) n/a GATA [3,634,554 / 3,634,557]
6 Ets n/a GGAA [3,634,568 / 3,634,571]

Sequence

Aniseed Coordinates: [3,634,435 / 3,634,629] on scaffold KhC4

Sequence from JGI V1.0

Show sequence

Length: 195


ACGGCCATAGTAGATTTAGCTTCCTGGTAAAAACATGAGTGGTTCCTGGCCTTTACCCTA
AACCAGGAAATAACCGCTTTGTTGTTGCGATCGCCTAATAAATATCAGCGTCTTCGTATG
ATA
AACTCAATGCGGAAGTACAAAATAAAGAGACTGTATTATGTTACTCTCCTTTGACTA
ACACTGTGAGAACCA