Login
Help

CIS-REGULATION

Submit your Data

  1. Region 'REG00000225'

Cis-regulatory Region

Name

Ci-sFRP1/5 -1999/-933

Short name

n/a

Region ID

REG00000225

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Clément Lamy (2007-11-10)

Annotator

Patrick Lemaire (2007-11-10)

Curator

Delphine Dauga (2010-02-26)

View position in WashU

Description

This region includes 1 kb of sFRP1/5 upstream sequences. It recapitulates the full early expression of sFRP1/5. Deletion analysis suggest the basal promoter is in the proximal 190bp.

Hierarchy of Regulatory Regions

Modification of Ci-sFRP1/5 -2000/1 by deletion

Regulated gene(s)

KH2012:KH.L171.5 (SFRP1; SFRP2; SFRP5)

Construct(s) made to test this region

CONS00000219: psFRP1/5 -1999/-933 pFOG::LacZ

Show in situ data
Overview of functional TF binding sites in this region

33,45234,517

Motif Name Binding Factor(s) Sequence Position in Region Comment
1 Fox n/a AAACA [33,892 / 33,896]
2 Fox n/a AAACA [33,932 / 33,936]
3 Fox n/a AAACA [33,942 / 33,946]
4 Fox n/a AAACA [34,034 / 34,038]

Sequence

Aniseed Coordinates: [33,452 / 34,517] on scaffold KhL171

JGI v1.0 version

Show sequence

Length: 1,066


TTACGCTCGATGGCGCAACGCAGTCACGACACGCTTTAAAAGAGAATGGTTTTAAAACAT
GGCGCTCTCTATAACGGTTATAGATAGAGGGTGCCATGTTTTAGAATAATACAATATCCT
TAAACCATTAGATGCAATCTAAGCATAAAATGTTTGTGAATCTATTGAAAGTATTTTTAA
AGCGCAGCAGTGTTTGATAGGCGAGAGATTTCTTCCGCTGTATATACAACTTTGCATTCA
TTCTGTGTTAACTTTTATTAATCGGAGTTAATGGCATTAATCGGAGATCTCTTAATTTTA
TTGAATGAGGTTTCTTTTGTGACGTGTCATTAGACGAACACTTCCTGTTAGTTCGACTAT
TATTATTCTAACCTAATTAAAGACACTCCCTCCATCTACGGGTTCTCATAGAATCTACTA
ATTACATAAAAGTCCAACAAAAACAAGTTTAATCGATTGACTCAAACTCGTTATCAGCAA
ACAAACGACTTGTTTACTTTTTTTCTTGTCCCGTTAACAGATTAGGAGTTGGTGCCAGAG
GATTGATTTCATTGTAATCTGTTGGTGTTGTGGCTCCAATTTAAACAAACGTGCTGAAAC
TGGTGCAGCTTACAGGGCTTAAATTTGGTTACGTTTTATGCTACACTAATTTGATAGCAA
AACATTTGTGCAGTGAATAGTTCGAAATGCTGCTGGAGTAACGAAATTTATAGGATAGCA
TATATGGCAGATGAAAGTCAACCCTTTCGTTGAGAAAATTCATGTTACCGTGACATTTTA
GTCAATTAGGTGAGGATTGACATGGAGTTTCGCTTGGTTGTAGATTGTACAACACGACAT
GTATAACACGATAACATATATAATATTACATTCACATGCTTTGATAGTGACATCCCTTTA
AAGAATGAATGTGACAAATACTAATTCATTTTTCATGGTTATGCTTCAGCGATTCGACAG
CGTGTAAGAAAAAAAGCATCATCAACATTTAGCGAATTTAGAACTTTGTGTATGCCGTAC
ATATGCCAGTGACAATAACCCTGCATACTATAGTTGCGGTTTAGTT

Reference(s)

Lamy et al. (2006). Ci-FoxA-a is the earliest zygotic determinant of the ascidian anterior ectoderm and directly activates Ci-sFRP1/5. Development 133(15):2835-44

Back to Top