- Region 'REG00000224'
Cis-regulatory Region
Name
Ci-sFRP1/5 -991/1
Short name
n/a
Region ID
REG00000224
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
inactive_region
Author
Clément Lamy (2007-11-10)
Annotator
Patrick Lemaire (2007-11-10)
Curator
Delphine Dauga (2010-02-26)
This region includes the first 5 flanking 1kb seq upstream of sFRP1/5. The region has no transcriptional activity.
Modification of Ci-sFRP1/5 -2000/1 by deletion
- Ci-sFRP1/5 -2000/1 REG00000223 [ regulatory_region (extended_promoter) ]
- Ci-sFRP1/5 -991/1 REG00000224 [ inactive_region ]
- Ci-sFRP1/5 -1999/-933 REG00000225 [ regulatory_region (extended_promoter) ]
- Ci-sFRP1/5 -1783/-1083 REG00000131 [ regulatory_region (enhancer) ]
- Ci-sFRP1/5 -1601/-1339 REG00000217 [ regulatory_region (enhancer) ]
- Ci-sFRP1/5 -1523/-1405 REG00000132 [ regulatory_region (enhancer) ]
- Ci-sFRP1/5 -1523/-1429 REG00000221 [ regulatory_region (enhancer) ]
- Ci-sFRP1/5 -1493/-1405 REG00000222 [ regulatory_region (enhancer) ]
- Ci-sFRP1/5 -1523/-1405 Fox1-2 mutated REG00000228 [ regulatory_region (enhancer) ]
- Ci-sFRP1/5 -1523/-1405 Fox3 mutated REG00000233 [ inactive_region ]
- Ci-sFRP1/5 6-fox sites REG00000241 [ regulatory_region (enhancer) ]
- Ci-sFRP1/5 -1601/-1430 REG00000219 [ regulatory_region (enhancer) ]
- Ci-sFRP1/5 -1523/-1405 REG00000132 [ regulatory_region (enhancer) ]
- Ci-sFRP1/5 -1601/-1339 REG00000217 [ regulatory_region (enhancer) ]
- Ci-sFRP1/5 -1783/-1083 REG00000131 [ regulatory_region (enhancer) ]
32,51933,509
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [32,519 / 33,509] on scaffold KhL171
JGI v1.0 version
Show sequence
Length: 991
TGTATGCCGTACATATGCCAGTGACAATAACCCTGCATACTATAGTTGCGGTTTAGTTTA
GTGCGACGGTTAGAAGTTTTATATTAATATTTCAATAGATTTTTGCGTTCTAGGCTGTAG
TGGTTCTTTTAAAGAAGGTATGATAAATTGTATGATATACAACAAAATATTTGCCATGTT
TTACGAAACACTCTAGTGATAAATTAATTTAGCTTCGATCAGAGAAACACTATGTGTTCA
ACCACTGTTGATCGATAAGAGGTGCAAATTTTTTATCGTGAAATGGGTCGATAAGCCGGT
ACAACTAAGTACCAGTTGCTTGCTGTGTTTCCTCGGTAGACCGCCGATCCGATCTGCTGA
TTTCGAGTGGGCTGACGGGCGCTTGCGGGCCAATTAGGTTTCAATTTACGGCGGATATCC
CGGTGAGGCGTCGATCTCAACAACCCTTCGATAGTTGCTTGGCATTTGTTGTCTCAAGTT
GGTTTATAAGATAATGATCCCCTTTCCTAAGCTAGACAAGTTAAGATATTGGTATGTGCG
ACCATGTTATTTACGCTTTGTATTTGTCTACAACTACTGACACTCTCCCCGGAAGGTTAA
AATTAAACAAGATATCCAGATGAATGCCGTTTTACCTCCGTTTAGTTTTTTAATTTTGCG
TACAATCACACATGAAATAGATTTTGTCGGATCAACTGCATGGGATGGTTAAGGCGTATT
CAAGCACTTTTCAAGTTTTTACATTCTGAACTTACCGTACAAAGGCGTTTCTGGTTCCTG
TCTGGCTCGGCGCTAATCGGAATTTGACAATCTCTCTTCTCGTCTGCGCGAGAAAAAAGT
TAACTAGGCTGTGGATTAGACCTAAAACTGTGATATCATCAGACAGTAGACATCGGTTGT
CAGATACGGGTGGTGTGACCGACAAGCTTTAGTGTTACGAGTCTTGGTTTAGTTCTCATG
TATAAAAACTATGTTTTTTCAGAGCCCCGAA
