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CIS-REGULATION

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  1. Region 'REG00000223'

Cis-regulatory Region

Name

Ci-sFRP1/5 -2000/1

Short name

n/a

Region ID

REG00000223

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Clément Lamy (2007-11-10)

Annotator

Patrick Lemaire (2007-11-10)

Curator

Delphine Dauga (2010-02-26)

View position in WashU

Description

This region is the root of the sFRP1/5 analysis (meaning includes all regions tested), but it was not itself experimentally tested.

Hierarchy of Regulatory Regions

Regulated gene(s)

KH2012:KH.L171.5 (SFRP1; SFRP2; SFRP5)

Construct(s) made to test this region
n/a
Overview of functional TF binding sites in this region

32,51934,517

Motif Name Binding Factor(s) Sequence Position in Region Comment
1 Fox n/a AAACA [32,959 / 32,963]
2 Fox n/a AAACA [32,999 / 33,003]
3 Fox n/a AAACA [33,009 / 33,013]
4 Fox n/a AAACA [33,101 / 33,105]

Sequence

Aniseed Coordinates: [32,519 / 34,517] on scaffold KhL171

Show sequence

Length: 1,999


TTACGCTCGATGGCGCAACGCAGTCACGACACGCTTTAAAAGAGAATGGTTTTAAAACAT
GGCGCTCTCTATAACGGTTATAGATAGAGGGTGCCATGTTTTAGAATAATACAATATCCT
TAAACCATTAGATGCAATCTAAGCATAAAATGTTTGTGAATCTATTGAAAGTATTTTTAA
AGCGCAGCAGTGTTTGATAGGCGAGAGATTTCTTCCGCTGTATATACAACTTTGCATTCA
TTCTGTGTTAACTTTTATTAATCGGAGTTAATGGCATTAATCGGAGATCTCTTAATTTTA
TTGAATGAGGTTTCTTTTGTGACGTGTCATTAGACGAACACTTCCTGTTAGTTCGACTAT
TATTATTCTAACCTAATTAAAGACACTCCCTCCATCTACGGGTTCTCATAGAATCTACTA
ATTACATAAAAGTCCAACAAAAACAAGTTTAATCGATTGACTCAAACTCGTTATCAGCAA
ACAAACGACTTGTTTACTTTTTTTCTTGTCCCGTTAACAGATTAGGAGTTGGTGCCAGAG
GATTGATTTCATTGTAATCTGTTGGTGTTGTGGCTCCAATTTAAACAAACGTGCTGAAAC
TGGTGCAGCTTACAGGGCTTAAATTTGGTTACGTTTTATGCTACACTAATTTGATAGCAA
AACATTTGTGCAGTGAATAGTTCGAAATGCTGCTGGAGTAACGAAATTTATAGGATAGCA
TATATGGCAGATGAAAGTCAACCCTTTCGTTGAGAAAATTCATGTTACCGTGACATTTTA
GTCAATTAGGTGAGGATTGACATGGAGTTTCGCTTGGTTGTAGATTGTACAACACGACAT
GTATAACACGATAACATATATAATATTACATTCACATGCTTTGATAGTGACATCCCTTTA
AAGAATGAATGTGACAAATACTAATTCATTTTTCATGGTTATGCTTCAGCGATTCGACAG
CGTGTAAGAAAAAAAGCATCATCAACATTTAGCGAATTTAGAACTTTGTGTATGCCGTAC
ATATGCCAGTGACAATAACCCTGCATACTATAGTTGCGGTTTAGTTTAGTGCGACGGTTA
GAAGTTTTATATTAATATTTCAATAGATTTTTGCGTTCTAGGCTGTAGTGGTTCTTTTAA
AGAAGGTATGATAAATTGTATGATATACAACAAAATATTTGCCATGTTTTACGAAACACT
CTAGTGATAAATTAATTTAGCTTCGATCAGAGAAACACTATGTGTTCAACCACTGTTGAT
CGATAAGAGGTGCAAATTTTTTATCGTGAAATGGGTCGATAAGCCGGTACAACTAAGTAC
CAGTTGCTTGCTGTGTTTCCTCGGTAGACCGCCGATCCGATCTGCTGATTTCGAGTGGGC
TGACGGGCGCTTGCGGGCCAATTAGGTTTCAATTTACGGCGGATATCCCGGTGAGGCGTC
GATCTCAACAACCCTTCGATAGTTGCTTGGCATTTGTTGTCTCAAGTTGGTTTATAAGAT
AATGATCCCCTTTCCTAAGCTAGACAAGTTAAGATATTGGTATGTGCGACCATGTTATTT
ACGCTTTGTATTTGTCTACAACTACTGACACTCTCCCCGGAAGGTTAAAATTAAACAAGA
TATCCAGATGAATGCCGTTTTACCTCCGTTTAGTTTTTTAATTTTGCGTACAATCACACA
TGAAATAGATTTTGTCGGATCAACTGCATGGGATGGTTAAGGCGTATTCAAGCACTTTTC
AAGTTTTTACATTCTGAACTTACCGTACAAAGGCGTTTCTGGTTCCTGTCTGGCTCGGCG
CTAATCGGAATTTGACAATCTCTCTTCTCGTCTGCGCGAGAAAAAAGTTAACTAGGCTGT
GGATTAGACCTAAAACTGTGATATCATCAGACAGTAGACATCGGTTGTCAGATACGGGTG
GTGTGACCGACAAGCTTTAGTGTTACGAGTCTTGGTTTAGTTCTCATGTATAAAAACTAT
GTTTTTTCAGAGCCCCGAA

Reference(s)

Lamy et al. (2006). Ci-FoxA-a is the earliest zygotic determinant of the ascidian anterior ectoderm and directly activates Ci-sFRP1/5. Development 133(15):2835-44

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