- Region 'REG00000200'
Cis-regulatory Region
Name
FoxF -1072/-777 delta E box
Short name
n/a
Region ID
REG00000200
Status
Curated
Origin
engineered region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(enhancer)
Transcription start site is based on the start of the first exon of the KH transcript model.
Coordinates and corresponding name in the paper : -1135/-840 delta E box.
Modification of FoxF -1072/-777 by deletion
- FoxF -2989/64 REG00000192 [ regulatory_region (extended_promoter) ]
- FoxF -1072/-777 REG00000193 [ regulatory_region (enhancer) ]
- FoxF -991/-777 REG00000197 [ regulatory_region (enhancer) ]
- FoxF -1072/-777 delta E box REG00000200 [ regulatory_region (enhancer) ]
- FoxF -1072/-777 EtsA mutated REG00000202 [ regulatory_region (enhancer) ]
- FoxF -1072/-777 EtsB mutated REG00000203 [ regulatory_region (enhancer) ]
- FoxF -1072/-777 EtsC mutated REG00000204 [ regulatory_region (enhancer) ]
- FoxF -1072/-777 EtsA,B mutated REG00000205 [ regulatory_region (enhancer) ]
- FoxF -781/64 REG00000196 [ regulatory_region (extended_promoter) ]
- FoxF -2989/64 Delta E-Box REG00000198 [ regulatory_region (extended_promoter) ]
- FoxF -1072/-777 REG00000193 [ regulatory_region (enhancer) ]
3,598,2493,598,543
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment | |
|---|---|---|---|---|---|
| 1 | Ets | n/a | AGGATT | [-993 / -988] | |
| 2 | Ets | n/a | AGGATG | [-951 / -946] | |
| 3 | Ets | n/a | TTTCCG | [-860 / -855] |
Aniseed Coordinates: [3,598,249 / 3,598,543] on scaffold KhC3
E box Motif deleted is represented by "-". The sequence was found in the paper.
Show sequence
Length: 295
GCGTTGTATCTTTCGTTAAGTGCTGGCGTCGAGCAGGGCTAACCTCATTTCGATTTGACG
ATTCGGGTAAAACCGAGCGATGGACAGGACCTGGAAATGGGAAAGGCTTACTAGAATCAG
GGTCGAACGAGATAAGAAGATCAGGATTCGCAAATTAG------GCTTTTTTACGTAGAA
ACATAGGATGTCCGCTGAGCCCCTTATATATACGTAGTACGAATCACCGGCCTGGCGTTG
TATAAGCGAGACCAGCGTGGACGAAAAGGTAATTGTTTCCGAATGGATCGCGTTC
