- Region 'REG00000197'
Cis-regulatory Region
Name
FoxF -991/-777
Short name
n/a
Region ID
REG00000197
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(enhancer)
Author
Jeni Beh (2007-10-12)
Annotator
Patrick Lemaire (2007-10-12)
Curator
Delphine Dauga (2010-03-31)
Transcription start site is based on the start of the first exon of the KH transcript model.
Coordinates in the paper : -1054/-840.
Modification of FoxF -1072/-777 by deletion
- FoxF -2989/64 REG00000192 [ regulatory_region (extended_promoter) ]
- FoxF -1072/-777 REG00000193 [ regulatory_region (enhancer) ]
- FoxF -991/-777 REG00000197 [ regulatory_region (enhancer) ]
- FoxF -1072/-777 delta E box REG00000200 [ regulatory_region (enhancer) ]
- FoxF -1072/-777 EtsA mutated REG00000202 [ regulatory_region (enhancer) ]
- FoxF -1072/-777 EtsB mutated REG00000203 [ regulatory_region (enhancer) ]
- FoxF -1072/-777 EtsC mutated REG00000204 [ regulatory_region (enhancer) ]
- FoxF -1072/-777 EtsA,B mutated REG00000205 [ regulatory_region (enhancer) ]
- FoxF -781/64 REG00000196 [ regulatory_region (extended_promoter) ]
- FoxF -2989/64 Delta E-Box REG00000198 [ regulatory_region (extended_promoter) ]
- FoxF -1072/-777 REG00000193 [ regulatory_region (enhancer) ]
3,598,2493,598,462
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment | |
|---|---|---|---|---|---|
| 1 | Ets | n/a | AGGATT | [-930 / -925] | |
| 2 | bHLH | n/a | CACTTG | [-914 / -909] | |
| 3 | Ets | n/a | AGGATG | [-888 / -883] | |
| 4 | Ets | n/a | TTTCCG | [-797 / -792] |
Aniseed Coordinates: [3,598,249 / 3,598,462] on scaffold KhC3
This region is the minimal region showing enhancer activity. This sequence was found in the paper.
Show sequence
Length: 214
GGACAGGACCTGGAAATGGGAAAGGCTTACTAGAATCAGGGTCGAACGAGATAAGAAGAT
CAGGATTCGCAAATTAGCACTTGGCTTTTTTACGTAGAAACATAGGATGTCCGCTGAGCC
CCTTATATATACGTAGTACGAATCACCGGCCTGGCGTTGTATAAGCGAGACCAGCGTGGA
CGAAAAGGTAATTGTTTCCGAATGGATCGCGTTC
