- Region 'REG00000196'
Cis-regulatory Region
Name
FoxF -781/64
Short name
n/a
Region ID
REG00000196
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(extended_promoter)
Transcription start site is based on the start of the first exon of the KH transcript model.
Coordinates in the paper : -845/+1.
Modification of FoxF -2989/64 by deletion
- FoxF -2989/64 REG00000192 [ regulatory_region (extended_promoter) ]
- FoxF -1072/-777 REG00000193 [ regulatory_region (enhancer) ]
- FoxF -991/-777 REG00000197 [ regulatory_region (enhancer) ]
- FoxF -1072/-777 delta E box REG00000200 [ regulatory_region (enhancer) ]
- FoxF -1072/-777 EtsA mutated REG00000202 [ regulatory_region (enhancer) ]
- FoxF -1072/-777 EtsB mutated REG00000203 [ regulatory_region (enhancer) ]
- FoxF -1072/-777 EtsC mutated REG00000204 [ regulatory_region (enhancer) ]
- FoxF -1072/-777 EtsA,B mutated REG00000205 [ regulatory_region (enhancer) ]
- FoxF -781/64 REG00000196 [ regulatory_region (extended_promoter) ]
- FoxF -2989/64 Delta E-Box REG00000198 [ regulatory_region (extended_promoter) ]
- FoxF -1072/-777 REG00000193 [ regulatory_region (enhancer) ]
3,597,4093,598,253
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [3,597,409 / 3,598,253] on scaffold KhC3
This sequence was found using a blast on the JGI site with the sequence includes in the paper.
Show sequence
Length: 845
CGTTCGAGAGAGCAGCGCTTTAATTAATTACCGAGGTGGTCGCCGCTCCGCCGCGGGCGA
GGTAGCAATTATACTTAATAAAGAGCCGTTAAGAAGTAGCAACTTTCGCCATTCAGTCAG
TCGTCGGCGCAGTAAATGTGTAGCTTCGTTTATGGGGATTATTCACGAATTAAGTCAACA
AGTTTATAGCAAAATTACGAGTCGTAAAGGTTGCCGATTCTATTCGAGGTATTTCGGTTT
ACAAGCCATGCCCCTTTACGGCGTTTTGGTAAAACTTAAACTAAAATAAAAATATGCTTA
AAGTTATCCTTAGACAAAAATCACGAGTTTGTACTAAATATAACATATACATATAAAATA
TAAGGAGATATATTTTTGTCGTGCCAGTTTCACACGATCAAGGCGTGTTAAAAATAAATA
CAGCGACTAGATTTAGAACTTGGAGCTATTCTTACTGAGCCATCTTGGATTGTTTATTTT
AAAATACAGACAGAGTTTATTTTGAAAGTAAACTTGGAGAAACGTTTGTAGCATCAAGAC
GTGATAGACAGAACTGTTTACTACGCGCTGAAGTTGTTTAATGTTTGAGCGATTCGGTTT
GTTTGCTGTTTATAAAACTCTGATGTAGCGGTTGGCCTAAGACTGTTTTGTTTGCCTGAT
GTAATCTGTCTGCTATTTAAATAAGAACAGAGAAAGCAAGCGTTCTTATTTTTGCTAAAT
ACAAAATATTTTATTAAGTATTTAGGAGTATTTATAATTTTAACCTGTGTTCTTTATTTA
AAAGATTTCTTTTAAGCGCTTTTAAATTATTACAAGACCAGTTTTACAACATCAGTTATT
GAAGT
