Aniseed - Cis-regulation

Cis-regulatory Region

Name

FoxF -781/64

Short name

n/a

Region ID

REG00000196

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Jeni Beh (2007-10-02)

Annotator

Clara Degos (2010-07-23)

Curator

Delphine Dauga (2010-03-31)

View position in WashU

Description

Transcription start site is based on the start of the first exon of the KH transcript model.

Coordinates in the paper : -845/+1.

Hierarchy of Regulatory Regions

Modification of FoxF -2989/64 by deletion

FoxF -2989/64 REG00000192 [ regulatory_region (extended_promoter) ]

Regulated gene(s)

KH2012:KH.C3.170 (FOXF1; FOXF2; FOXL1)

Construct(s) made to test this region

CONS00001499: pFoxF -781bp/64bp::H2B>mCh

CONS00000194: pFoxF -781bp/64bp::LacZ

Show in situ data

Overview of functional TF binding sites in this region

3,597,4093,598,253

	Motif Name	Binding Factor(s)	Sequence	Position in Region	Comment

Sequence

Aniseed Coordinates: [3,597,409 / 3,598,253] on scaffold KhC3

This sequence was found using a blast on the JGI site with the sequence includes in the paper.

Show sequence

Length: 845

CGTTCGAGAGAGCAGCGCTTTAATTAATTACCGAGGTGGTCGCCGCTCCGCCGCGGGCGA
GGTAGCAATTATACTTAATAAAGAGCCGTTAAGAAGTAGCAACTTTCGCCATTCAGTCAG
TCGTCGGCGCAGTAAATGTGTAGCTTCGTTTATGGGGATTATTCACGAATTAAGTCAACA
AGTTTATAGCAAAATTACGAGTCGTAAAGGTTGCCGATTCTATTCGAGGTATTTCGGTTT
ACAAGCCATGCCCCTTTACGGCGTTTTGGTAAAACTTAAACTAAAATAAAAATATGCTTA
AAGTTATCCTTAGACAAAAATCACGAGTTTGTACTAAATATAACATATACATATAAAATA
TAAGGAGATATATTTTTGTCGTGCCAGTTTCACACGATCAAGGCGTGTTAAAAATAAATA
CAGCGACTAGATTTAGAACTTGGAGCTATTCTTACTGAGCCATCTTGGATTGTTTATTTT
AAAATACAGACAGAGTTTATTTTGAAAGTAAACTTGGAGAAACGTTTGTAGCATCAAGAC
GTGATAGACAGAACTGTTTACTACGCGCTGAAGTTGTTTAATGTTTGAGCGATTCGGTTT
GTTTGCTGTTTATAAAACTCTGATGTAGCGGTTGGCCTAAGACTGTTTTGTTTGCCTGAT
GTAATCTGTCTGCTATTTAAATAAGAACAGAGAAAGCAAGCGTTCTTATTTTTGCTAAAT
ACAAAATATTTTATTAAGTATTTAGGAGTATTTATAATTTTAACCTGTGTTCTTTATTTA
AAAGATTTCTTTTAAGCGCTTTTAAATTATTACAAGACCAGTTTTACAACATCAGTTATT
GAAGT

Reference(s)

Beh et al. (2007). FoxF is essential for FGF-induced migration of heart progenitor cells in the ascidian Ciona intestinalis. Development 134(18):3297-305