Aniseed - Cis-regulation

Region 'REG00000194'

Cis-regulatory Region

Name

pfkh

Short name

n/a

Region ID

REG00000194

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(RNApol_II_core_promoter)

Author

N. Harafuji (2007-10-02)

Annotator

Patrick Lemaire (2007-10-02)

Curator

Patrick Lemaire (2007-10-02)

View position in WashU

Description

minimal promoter found in the pCESA reporter plasmid used in the Levine lab. This region includes the first 86 codons of foxAa.

Hierarchy of Regulatory Regions

pfkh REG00000194 [ regulatory_region (RNApol_II_core_promoter) ]

Regulated gene(s)

KH2012:KH.C11.313 (FOXA1; FOXA2; FOXA3)

Construct(s) made to test this region

CONS00001498: p.pfkh>LacZ

Show in situ data

Overview of functional TF binding sites in this region

4,404,4534,404,868

	Motif Name	Binding Factor(s)	Sequence	Position in Region	Comment

Sequence

Aniseed Coordinates: [4,404,453 / 4,404,868] on scaffold KhC11

Show sequence

Length: 416

TCTTTGACCAATAATTTCGCCGCCATTTTTTTCTTAAAATATCACGGCCAGTTTTTAACA
AGTTATTTTTCTAGCTTTCTATTTGAAATATTATACACAACTGCTGCTGTAATTTCTGAG
AAAGCTTTTGAAATCGGATTACTTTTGCAAGTACAAAAATGATGTTGTCGTCTCCACCGT
CAAAGTACCAACCCTTCCAACAGTCTTATGCTACTGGTATGAACAATATGACCAACGGTA
TGCAGCCTTCATACGTCAACCAGATGAACCCAATGTCGCTTACAGCTGCTGGCAACCAGG
TCGGATTTAACCAAGCTTTACCGCAAGGATATGGCGGCGTATCGTTTAATGGTATGGGCA
CAAGTGCGATGAACGGCCACTCACCCCACAGCGTTCAAATTGCTGCCGCGGCCGCT

Reference(s)

Garstang et al. (2016). TCF/Lef regulates the Gsx ParaHox gene in central nervous system development in chordates. BMC Evol. Biol. 16():57

Harafuji et al. (2002). Genome-wide identification of tissue-specific enhancers in the Ciona tadpole. Proc. Natl. Acad. Sci. U.S.A. 99(10):6802-5